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Re: [Cleaver] nrrd file read error


Chronological Thread 
  • From: Brig Bagley <brig@sci.utah.edu>
  • To: Elizabeth Jurrus <liz@sci.utah.edu>, cleaver@sci.utah.edu
  • Cc: 1092493373@qq.com
  • Subject: Re: [Cleaver] nrrd file read error
  • Date: Thu, 28 May 2015 10:30:39 -0600
Hi Dan,

I'm currently the primary developer for Cleaver2. I'll do my best to answer your questions.

1. We're aware that Cleaver2 on Windows can struggle with large data sets. There is particularly an issue when re-loading new data on the same run. For now, the best solution is to use a high memory machine and to restart Cleaver2 (GUI) for each new data set.

2. We will be soon releasing new binaries for Cleaver2 GUI and command-line tools. It will be available on Windows 7 (32bit) and up, OSX 10.9 and up, and OpenSuse 13.1 (Linux) and up. Other earlier platforms may work, but are not officially supported. Each binary will include the BZIP2 libraries for the NRRD reading, and the error you mentioned should no longer be an issue. If you are building Cleaver2 locally, be sure to install bzip2 (http://www.bzip.org/) on your machine before configuring.

The new binaries will be available early July 2015.

3. Could you rephrase your last question with exporting and crashing on Windows? I'm still unclear with the details of the problem you are experiencing.

Please let me know of any more questions you may have.
Regards,

Brig Bagley
Research Software Engineer
SCI Institute, University of Utah
WEB 3616
brig@sci.utah.edu
801.613.7718
On 05/28/2015 08:29 AM, Elizabeth Jurrus wrote:
One more for the mailing list.?0?2 Please advise.?0?2 Thank you!
- liz


-------- Forwarded Message -------- Subject: ??????cleaver crash question Date: Thu, 28 May 2015 20:21:33 +0800 From: ?? <1092493373@qq.com> To: Elizabeth Jurrus <liz@sci.utah.edu>

Hi?0?2liz
?0?2 I am sorry to bother you again.I found that when we use cleaver to read ".nrrd" file on Linux.It always has this error:??sorry,?0?2this?0?2nrrd?0?2not?0?2compiled?0?2with?0?2gzip?0?2enabled???0?2.Hope for your answer and thank you very much!


------------------?0?2?????? ???0?2------------------
??????:?0?2"Elizabeth Jurrus";<liz@sci.utah.edu>;
????????:?0?22015??5??27??(??????) ????10:48
??????:?0?2"??"<1092493373@qq.com>;
????:?0?2"cleaver"<cleaver@sci.utah.edu>;
????:?0?2cleaver crash question

Hi Dan,

Forwarding your question to our cleaver mailing list.?0?2 I assume you're having trouble on windows.?0?2 Can you describe the dataset you're trying to use and when the program crashes?

- liz


-------- Forwarded Message -------- Subject: Contact CIBC Submission Date: Tue, 26 May 2015 21:21:50 -0600 From: SCI Webmaster <webmaster@sci.utah.edu> To: webmaster@sci.utah.edu, liz@sci.utah.edu

Dan wang <1092493373@qq.com>

Affiliation:

Re Software: Cleaver

Subject: It always have program crash when using.

Message: It always have program crash when using but not because of the memory of my PC.







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