scirun-users - Re: [SCIRUN-USERS] error building dynamics libraries:sci_gl.h not found

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Re: [SCIRUN-USERS] error building dynamics libraries:sci_gl.h not found

From: McKay Davis <mdavis@sci.utah.edu>
To: Shi Jin <jinzishuai@yahoo.com>
Cc: scirun-users <scirun-users@sci.utah.edu>
Subject: Re: [SCIRUN-USERS] error building dynamics libraries:sci_gl.h not found
Date: Mon, 28 Feb 2005 16:25:10 -0700

Shi Jin,
This is a bug in the 1.24.0b release. The tarballs did not have correct permissions on two files: 'SCIRun/src/include/sci_gl.h' and 'SCIRun/src/include/sci_glx.h'. This will be fixed in the official 1.24.0 release, but in the meantime you can fix it by changing to the 'SCIRun/src/include' directory and executing the command:
> chmod a+r *

-McKay Davis
SCIRun Developer

Shi Jin wrote:

Hi there,

I just tried SCIRun yesterday. I built everything from
source code and it seemed to work.
But when I followed the SCIRun tutorialto do the
chapter 1 Geometry Visualization case, I encountered
compilation error.

The error messages are below(mainly sci_gl.h not found
but I do find it under the src/include directory which
is indeed inside the Makefile or my
~/SCIRun/on-the-fly-libs/Linux/Makefile):

---------------------Begin-----------------------
In file included from
/usr/local/src/SCIRun/src/Core/Geom/GeomCylinder.h:47,
                from
/usr/local/src/SCIRun/src/Core/Algorithms/Visualization/RenderField.h:45,
                from
RenderField.TetVolFielddouble.TetVolMeshNode.cc:3:
/usr/local/src/SCIRun/src/Core/Geom/GeomOpenGL.h:53:20:
sci_gl.h: No such file or directory
/usr/local/src/SCIRun/src/Core/Geom/GeomOpenGL.h:55:21:
sci_glx.h: No such file or directory
In file included from
/usr/local/src/SCIRun/src/Core/Geom/GeomCylinder.h:47,
                from
/usr/local/src/SCIRun/src/Core/Algorithms/Visualization/RenderField.h:45,
                from
RenderField.TetVolFielddouble.TetVolMeshNode.cc:3:
/usr/local/src/SCIRun/src/Core/Geom/GeomOpenGL.h:148:
error: syntax error before `*' token
gmake: ***
[RenderField.TetVolFielddouble.TetVolMeshNode.o] Error
1
DYNAMIC COMPILATION ERROR:
/home/seki/SCIRun/on-the-fly-libs/Linux/RenderField.TetVolFielddouble.TetVolMeshNode.so
does not compile!!
REMARK: Dynamic compilation completed.
ERROR: Could not compile algorithm for
'RenderField<TetVolField<double> , TetVolMesh::Node>'.
REMARK: Dynamically compiling some code.
DynamicLoader - Successfully created
/home/seki/SCIRun/on-the-fly-libs/Linux/RenderField.TetVolFielddouble.TetVolMeshNode.cc
DynamicLoader - Executing: cd
/home/seki/SCIRun/on-the-fly-libs/Linux;
/usr/bin/gmake
RenderField.TetVolFielddouble.TetVolMeshNode.so
DynamicLoader::compile_so() syscal error 512: command
was 'cd /home/seki/SCIRun/on-the-fly-libs/Linux;
/usr/bin/gmake
RenderField.TetVolFielddouble.TetVolMeshNode.so >
RenderField.TetVolFielddouble.TetVolMeshNode.log 2>&1'
set -e; g++ -M -Wall -O2 -I/opt/SCIRun/Thirdparty/1.24/Linux/gcc-3.3.2-32bit/include
-I/opt/SCIRun/Thirdparty/1.24/Linux/gcc-3.3.2-32bit/src/tcl8.3.2/generic
-I/opt/SCIRun/Thirdparty/1.24/Linux/gcc-3.3.2-32bit/src/tk8.3.2/generic
-I/opt/SCIRun/Thirdparty/1.24/Linux/gcc-3.3.2-32bit/src/tk8.3.2/unix
-I/usr/X11R6/include -I/usr/local/src/SCIRun/build-dir
-I/usr/local/src/SCIRun/build-dir/include
-I/usr/local/src/SCIRun/src
-I/usr/local/src/SCIRun/src/Packages
-I/usr/local/src/SCIRun/src/include
RenderField.TetVolFielddouble.TetVolMeshNode.cc \
         | sed
's/\(RenderField.TetVolFielddouble.TetVolMeshNode\)\.o[
:]*/\1.o
RenderField.TetVolFielddouble.TetVolMeshNode.d : /g' >
RenderField.TetVolFielddouble.TetVolMeshNode.d; \
         [ -s
RenderField.TetVolFielddouble.TetVolMeshNode.d ] || rm
-f RenderField.TetVolFielddouble.TetVolMeshNode.d
In file included from
/usr/local/src/SCIRun/src/Core/Geom/GeomCylinder.h:47,
                from
/usr/local/src/SCIRun/src/Core/Algorithms/Visualization/RenderField.h:45,
                from
RenderField.TetVolFielddouble.TetVolMeshNode.cc:3:
/usr/local/src/SCIRun/src/Core/Geom/GeomOpenGL.h:53:20:
sci_gl.h: No such file or directory
/usr/local/src/SCIRun/src/Core/Geom/GeomOpenGL.h:55:21:
sci_glx.h: No such file or directory
rm -f RenderField.TetVolFielddouble.TetVolMeshNode.o
RenderField.TetVolFielddouble.TetVolMeshNode.so
RenderField.TetVolFielddouble.TetVolMeshNode.dylib
g++ -c -Wall -O2 -I/opt/SCIRun/Thirdparty/1.24/Linux/gcc-3.3.2-32bit/include
-I/opt/SCIRun/Thirdparty/1.24/Linux/gcc-3.3.2-32bit/src/tcl8.3.2/generic
-I/opt/SCIRun/Thirdparty/1.24/Linux/gcc-3.3.2-32bit/src/tk8.3.2/generic
-I/opt/SCIRun/Thirdparty/1.24/Linux/gcc-3.3.2-32bit/src/tk8.3.2/unix
-I/usr/X11R6/include -I/usr/local/src/SCIRun/build-dir
-I/usr/local/src/SCIRun/build-dir/include
-I/usr/local/src/SCIRun/src
-I/usr/local/src/SCIRun/src/Packages
-I/usr/local/src/SCIRun/src/include
RenderField.TetVolFielddouble.TetVolMeshNode.cc -o
RenderField.TetVolFielddouble.TetVolMeshNode.o In file included from
/usr/local/src/SCIRun/src/Core/Geom/GeomCylinder.h:47,
                from
/usr/local/src/SCIRun/src/Core/Algorithms/Visualization/RenderField.h:45,
                from
RenderField.TetVolFielddouble.TetVolMeshNode.cc:3:
/usr/local/src/SCIRun/src/Core/Geom/GeomOpenGL.h:53:20:
sci_gl.h: No such file or directory
/usr/local/src/SCIRun/src/Core/Geom/GeomOpenGL.h:55:21:
sci_glx.h: No such file or directory
In file included from
/usr/local/src/SCIRun/src/Core/Geom/GeomCylinder.h:47,
                from
/usr/local/src/SCIRun/src/Core/Algorithms/Visualization/RenderField.h:45,
                from
RenderField.TetVolFielddouble.TetVolMeshNode.cc:3:
/usr/local/src/SCIRun/src/Core/Geom/GeomOpenGL.h:148:
error: syntax error before `*' token
gmake: ***
[RenderField.TetVolFielddouble.TetVolMeshNode.o] Error
1
DYNAMIC COMPILATION ERROR:
/home/seki/SCIRun/on-the-fly-libs/Linux/RenderField.TetVolFielddouble.TetVolMeshNode.so
does not compile!!
REMARK: Dynamic compilation completed.
ERROR: Could not compile algorithm for
'RenderField<TetVolField<double> , TetVolMesh::Node>'.
REMARK: Dynamically compiling some code.
DynamicLoader - Successfully created
/home/seki/SCIRun/on-the-fly-libs/Linux/RenderField.TetVolFielddouble.TetVolMeshNode.cc
DynamicLoader - Executing: cd
/home/seki/SCIRun/on-the-fly-libs/Linux;
/usr/bin/gmake
RenderField.TetVolFielddouble.TetVolMeshNode.so
DynamicLoader::compile_so() syscal error 512: command
was 'cd /home/seki/SCIRun/on-the-fly-libs/Linux;
/usr/bin/gmake
RenderField.TetVolFielddouble.TetVolMeshNode.so >
RenderField.TetVolFielddouble.TetVolMeshNode.log 2>&1'
set -e; g++ -M -Wall -O2 -I/opt/SCIRun/Thirdparty/1.24/Linux/gcc-3.3.2-32bit/include
-I/opt/SCIRun/Thirdparty/1.24/Linux/gcc-3.3.2-32bit/src/tcl8.3.2/generic
-I/opt/SCIRun/Thirdparty/1.24/Linux/gcc-3.3.2-32bit/src/tk8.3.2/generic
-I/opt/SCIRun/Thirdparty/1.24/Linux/gcc-3.3.2-32bit/src/tk8.3.2/unix
-I/usr/X11R6/include -I/usr/local/src/SCIRun/build-dir
-I/usr/local/src/SCIRun/build-dir/include
-I/usr/local/src/SCIRun/src
-I/usr/local/src/SCIRun/src/Packages
-I/usr/local/src/SCIRun/src/include
RenderField.TetVolFielddouble.TetVolMeshNode.cc \
         | sed
's/\(RenderField.TetVolFielddouble.TetVolMeshNode\)\.o[
:]*/\1.o
RenderField.TetVolFielddouble.TetVolMeshNode.d : /g' >
RenderField.TetVolFielddouble.TetVolMeshNode.d; \
         [ -s
RenderField.TetVolFielddouble.TetVolMeshNode.d ] || rm
-f RenderField.TetVolFielddouble.TetVolMeshNode.d
In file included from
/usr/local/src/SCIRun/src/Core/Geom/GeomCylinder.h:47,
                from
/usr/local/src/SCIRun/src/Core/Algorithms/Visualization/RenderField.h:45,
                from
RenderField.TetVolFielddouble.TetVolMeshNode.cc:3:
/usr/local/src/SCIRun/src/Core/Geom/GeomOpenGL.h:53:20:
sci_gl.h: No such file or directory
/usr/local/src/SCIRun/src/Core/Geom/GeomOpenGL.h:55:21:
sci_glx.h: No such file or directory
rm -f RenderField.TetVolFielddouble.TetVolMeshNode.o
RenderField.TetVolFielddouble.TetVolMeshNode.so
RenderField.TetVolFielddouble.TetVolMeshNode.dylib
g++ -c -Wall -O2 -I/opt/SCIRun/Thirdparty/1.24/Linux/gcc-3.3.2-32bit/include
-I/opt/SCIRun/Thirdparty/1.24/Linux/gcc-3.3.2-32bit/src/tcl8.3.2/generic
-I/opt/SCIRun/Thirdparty/1.24/Linux/gcc-3.3.2-32bit/src/tk8.3.2/generic
-I/opt/SCIRun/Thirdparty/1.24/Linux/gcc-3.3.2-32bit/src/tk8.3.2/unix
-I/usr/X11R6/include -I/usr/local/src/SCIRun/build-dir
-I/usr/local/src/SCIRun/build-dir/include
-I/usr/local/src/SCIRun/src
-I/usr/local/src/SCIRun/src/Packages
-I/usr/local/src/SCIRun/src/include
RenderField.TetVolFielddouble.TetVolMeshNode.cc -o
RenderField.TetVolFielddouble.TetVolMeshNode.o In file included from
/usr/local/src/SCIRun/src/Core/Geom/GeomCylinder.h:47,
                from
/usr/local/src/SCIRun/src/Core/Algorithms/Visualization/RenderField.h:45,
                from
RenderField.TetVolFielddouble.TetVolMeshNode.cc:3:
/usr/local/src/SCIRun/src/Core/Geom/GeomOpenGL.h:53:20:
sci_gl.h: No such file or directory
/usr/local/src/SCIRun/src/Core/Geom/GeomOpenGL.h:55:21:
sci_glx.h: No such file or directory
In file included from
/usr/local/src/SCIRun/src/Core/Geom/GeomCylinder.h:47,
                from
/usr/local/src/SCIRun/src/Core/Algorithms/Visualization/RenderField.h:45,
                from
RenderField.TetVolFielddouble.TetVolMeshNode.cc:3:
/usr/local/src/SCIRun/src/Core/Geom/GeomOpenGL.h:148:
error: syntax error before `*' token
gmake: ***
[RenderField.TetVolFielddouble.TetVolMeshNode.o] Error
1
DYNAMIC COMPILATION ERROR:
/home/seki/SCIRun/on-the-fly-libs/Linux/RenderField.TetVolFielddouble.TetVolMeshNode.so
does not compile!!
REMARK: Dynamic compilation completed.
ERROR: Could not compile algorithm for
'RenderField<TetVolField<double> , TetVolMesh::Node>'.


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===========================================================================
== The SCIRun Users mailing list: send email to majordomo@sci.utah.edu   ==
== for more details.                                                     ==
== Please acknowledge use of SCIRun in your papers and reports:          ==
==   see http://software.sci.utah.edu/scirun-biopse_citation.bib         ==
===========================================================================

[SCIRUN-USERS] error building dynamics libraries:sci_gl.h not found, Shi Jin, 02/28/2005
- Re: [SCIRUN-USERS] error building dynamics libraries:sci_gl.h not found, McKay Davis, 02/28/2005

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