Hi,

 

I cannot run scirun on ubuntu 11.04 because of error

 

First try was scirun 4.4 but i fail to run it. So i compile scirun 4.3 , it also fail

 

errors were same among 4.4 and 4.3

 

how should i do?

 

root@danielkim-Vostro-430:/usr/local/SCIRun/bin# ./scirun ../src/nets/Samples/isocontour.srn 

SCIRun version 4.3 revision 

*** buffer overflow detected ***: ./scirun terminated

======= Backtrace: =========

/lib/x86_64-linux-gnu/libc.so.6(__fortify_fail+0x37)[0x7fc15cea11d7]

/lib/x86_64-linux-gnu/libc.so.6(+0xfd0f0)[0x7fc15cea00f0]

/usr/local/SCIRun/bin/lib/libtcl.8.6.so(+0xec8b2)[0x7fc15d9568b2]

/usr/local/SCIRun/bin/lib/libtcl.8.6.so(+0xeccc8)[0x7fc15d956cc8]

/usr/local/SCIRun/bin/lib/libtcl.8.6.so(TclNRRunCallbacks+0x68)[0x7fc15d8a9038]

/usr/local/SCIRun/bin/lib/libtcl.8.6.so(+0x8c84f)[0x7fc15d8f684f]

/usr/local/SCIRun/bin/lib/libtcl.8.6.so(TclNRRunCallbacks+0x68)[0x7fc15d8a9038]

/usr/local/SCIRun/bin/lib/libtcl.8.6.so(+0x59918)[0x7fc15d8c3918]

/usr/local/SCIRun/bin/lib/libtcl.8.6.so(TclNRRunCallbacks+0x68)[0x7fc15d8a9038]

/usr/local/SCIRun/bin/lib/libtcl.8.6.so(+0x4132f)[0x7fc15d8ab32f]

/usr/local/SCIRun/bin/lib/libtcl.8.6.so(Tcl_FSEvalFileEx+0x22e)[0x7fc15d91c42e]

/usr/local/SCIRun/bin/lib/libtcl.8.6.so(+0x58e2b)[0x7fc15d8c2e2b]

/usr/local/SCIRun/bin/lib/libtcl.8.6.so(TclNRRunCallbacks+0x68)[0x7fc15d8a9038]

/usr/local/SCIRun/bin/lib/libtcl.8.6.so(+0x8c84f)[0x7fc15d8f684f]

/usr/local/SCIRun/bin/lib/libtcl.8.6.so(TclNRRunCallbacks+0x68)[0x7fc15d8a9038]

/usr/local/SCIRun/bin/lib/libtcl.8.6.so(TclNREvalObjv+0xa9f)[0x7fc15d8a9c3f]

/usr/local/SCIRun/bin/lib/libtcl.8.6.so(+0x8c834)[0x7fc15d8f6834]

/usr/local/SCIRun/bin/lib/libtcl.8.6.so(TclNRRunCallbacks+0x68)[0x7fc15d8a9038]

/usr/local/SCIRun/bin/lib/libtcl.8.6.so(+0x41773)[0x7fc15d8ab773]

/usr/local/SCIRun/bin/lib/libtcl.8.6.so(Tcl_Eval+0x1d)[0x7fc15d8ab8ed]

/usr/local/SCIRun/bin/lib/libtk.8.6.so(+0xa641f)[0x7fc16065941f]

/usr/local/SCIRun/bin/lib/libDataflow_GuiInterface.so(_ZN6SCIRun7appInitEP10Tcl_Interp+0x28)[0x7fc161ea2fd8]

/usr/local/SCIRun/bin/lib/libtk.8.6.so(Tk_MainEx+0x1f2)[0x7fc16064a782]

/usr/local/SCIRun/bin/lib/libDataflow_GuiInterface.so(_ZN6SCIRun9TCLThread3runEv+0x6c)[0x7fc161ea2e4c]

/usr/local/SCIRun/bin/lib/libCore_Thread.so(_ZN6SCIRun6Thread8run_bodyEv+0x17)[0x7fc1629a7957]

/usr/local/SCIRun/bin/lib/libCore_Thread.so(_ZN6SCIRun11run_threadsEPv+0x9d)[0x7fc1629afadd]

/usr/lib/nvidia-current/libGL.so.1(+0x9e853)[0x7fc160130853]

======= Memory map: ========

00400000-0040e000 r-xp 00000000 08:01 13257505                           /usr/local/SCIRun/bin/scirun

0060d000-0060e000 r--p 0000d000 08:01 13257505                           /usr/local/SCIRun/bin/scirun

0060e000-0060f000 rw-p 0000e000 08:01 13257505                           /usr/local/SCIRun/bin/scirun

020f8000-022b1000 rw-p 00000000 00:00 0                                  [heap]

7fc15758c000-7fc157598000 r-xp 00000000 08:01 1183404                    /lib/x86_64-linux-gnu/libnss_files-2.13.so

7fc157598000-7fc157797000 ---p 0000c000 08:01 1183404                    /lib/x86_64-linux-gnu/libnss_files-2.13.so

7fc157797000-7fc157798000 r--p 0000b000 08:01 1183404                    /lib/x86_64-linux-gnu/libnss_files-2.13.so

7fc157798000-7fc157799000 rw-p 0000c000 08:01 1183404                    /lib/x86_64-linux-gnu/libnss_files-2.13.so

7fc157799000-7fc1577a4000 r-xp 00000000 08:01 1183408                    /lib/x86_64-linux-gnu/libnss_nis-2.13.so

7fc1577a4000-7fc1579a3000 ---p 0000b000 08:01 1183408                    /lib/x86_64-linux-gnu/libnss_nis-2.13.so

7fc1579a3000-7fc1579a4000 r--p 0000a000 08:01 1183408                    /lib/x86_64-linux-gnu/libnss_nis-2.13.so

7fc1579a4000-7fc1579a5000 rw-p 0000b000 08:01 1183408                    /lib/x86_64-linux-gnu/libnss_nis-2.13.so

7fc1579a5000-7fc1579bc000 r-xp 00000000 08:01 1183398                    /lib/x86_64-linux-gnu/libnsl-2.13.so

7fc1579bc000-7fc157bbb000 ---p 00017000 08:01 1183398                    /lib/x86_64-linux-gnu/libnsl-2.13.so

7fc157bbb000-7fc157bbc000 r--p 00016000 08:01 1183398                    /lib/x86_64-linux-gnu/libnsl-2.13.so

7fc157bbc000-7fc157bbd000 rw-p 00017000 08:01 1183398                    /lib/x86_64-linux-gnu/libnsl-2.13.so

7fc157bbd000-7fc157bbf000 rw-p 00000000 00:00 0 

7fc157bbf000-7fc157bc7000 r-xp 00000000 08:01 1183400                    /lib/x86_64-linux-gnu/libnss_compat-2.13.so

7fc157bc7000-7fc157dc6000 ---p 00008000 08:01 1183400                    /lib/x86_64-linux-gnu/libnss_compat-2.13.so

7fc157dc6000-7fc157dc7000 r--p 00007000 08:01 1183400                    /lib/x86_64-linux-gnu/libnss_compat-2.13.so

7fc157dc7000-7fc157dc8000 rw-p 00008000 08:01 1183400                    /lib/x86_64-linux-gnu/libnss_compat-2.13.so

7fc157dc8000-7fc157dc9000 ---p 00000000 00:00 0 

7fc157dc9000-7fc1585c9000 rw-p 00000000 00:00 0 

7fc1585c9000-7fc158d84000 r--p 00000000 08:01 11017199                   /usr/lib/locale/locale-archive

7fc158d84000-7fc158d85000 ---p 00000000 00:00 0 

7fc158d85000-7fc158e85000 rw-p 00000000 00:00 0 

7fc158e85000-7fc158e86000 ---p 00000000 00:00 0 

7fc158e86000-7fc158ec6000 rw-p 00000000 00:00 0 

7fc158ec6000-7fc158ed7000 r-xp 00000000 08:01 15601966                   /usr/local/SCIRun/bin/lib/libPackages_MatlabInterface_Services.so

7fc158ed7000-7fc1590d6000 ---p 00011000 08:01 15601966                   /usr/local/SCIRun/bin/lib/libPackages_MatlabInterface_Services.so

7fc1590d6000-7fc1590d7000 r--p 00010000 08:01 15601966                   /usr/local/SCIRun/bin/lib/libPackages_MatlabInterface_Services.so

7fc1590d7000-7fc1590d8000 rw-p 00011000 08:01 15601966                   /usr/local/SCIRun/bin/lib/libPackages_MatlabInterface_Services.so

7fc1590d8000-7fc1590eb000 r-xp 00000000 08:01 15601970                   /usr/local/SCIRun/bin/lib/libCore_Algorithms_Util.so

7fc1590eb000-7fc1592ea000 ---p 00013000 08:01 15601970                   /usr/local/SCIRun/bin/lib/libCore_Algorithms_Util.so

7fc1592ea000-7fc1592eb000 r--p 00012000 08:01 15601970                   /usr/local/SCIRun/bin/lib/libCore_Algorithms_Util.so

7fc1592eb000-7fc1592ec000 rw-p 00013000 08:01 15601970                   /usr/local/SCIRun/bin/lib/libCore_Algorithms_Util.so

7fc1592ec000-7fc15938e000 r-xp 00000000 08:01 15602254                   /usr/local/SCIRun/bin/lib/libCore_Algorithms_Converter.so

7fc15938e000-7fc15958d000 ---p 000a2000 08:01 15602254                   /usr/local/SCIRun/bin/lib/libCore_Algorithms_Converter.so

7fc15958d000-7fc15958e000 r--p 000a1000 08:01 15602254                   /usr/local/SCIRun/bin/lib/libCore_Algorithms_Converter.so

7fc15958e000-7fc15958f000 rw-p 000a2000 08:01 15602254                   /usr/local/SCIRun/bin/lib/libCore_Algorithms_Converter.so

7fc15958f000-7fc1595a2000 r-xp 00000000 08:01 15602147                   /usr/local/SCIRun/bin/lib/libCore_Algorithms_DataIO.so

Thread "TCL main event loop" (id: 140468397033216, pid: 10741) 

caught signal SIGABRT (Abort) 

...handle_abort_signals...

niceAbort

Backtrace:

1. /usr/local/SCIRun/bin/lib/libCore_Thread.so

  in SCIRun::handle_abort_signals(int, siginfo*, void*)

2. /lib/x86_64-linux-gnu/libpthread.so.0(+0xfc60) [0x7fc15dbd9c60]

3. /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x35) [0x7fc15cdd6d05]

4. /lib/x86_64-linux-gnu/libc.so.6(abort+0x186) [0x7fc15cddaab6]

5. /lib/x86_64-linux-gnu/libc.so.6(+0x6cd7b) [0x7fc15ce0fd7b]

6. /lib/x86_64-linux-gnu/libc.so.6(__fortify_fail+0x37) [0x7fc15cea11d7]

7. /lib/x86_64-linux-gnu/libc.so.6(+0xfd0f0) [0x7fc15cea00f0]

8. /usr/local/SCIRun/bin/lib/libtcl.8.6.so(+0xec8b2) [0x7fc15d9568b2]

9. /usr/local/SCIRun/bin/lib/libtcl.8.6.so(+0xeccc8) [0x7fc15d956cc8]

a. /usr/local/SCIRun/bin/lib/libtcl.8.6.so(TclNRRunCallbacks+0x68) [0x7fc15d8a9038]

b. /usr/local/SCIRun/bin/lib/libtcl.8.6.so(+0x8c84f) [0x7fc15d8f684f]

c. /usr/local/SCIRun/bin/lib/libtcl.8.6.so(TclNRRunCallbacks+0x68) [0x7fc15d8a9038]

d. /usr/local/SCIRun/bin/lib/libtcl.8.6.so(+0x59918) [0x7fc15d8c3918]

e. /usr/local/SCIRun/bin/lib/libtcl.8.6.so(TclNRRunCallbacks+0x68) [0x7fc15d8a9038]

f. /usr/local/SCIRun/bin/lib/libtcl.8.6.so(+0x4132f) [0x7fc15d8ab32f]

10. /usr/local/SCIRun/bin/lib/libtcl.8.6.so(Tcl_FSEvalFileEx+0x22e) [0x7fc15d91c42e]

11. /usr/local/SCIRun/bin/lib/libtcl.8.6.so(+0x58e2b) [0x7fc15d8c2e2b]

12. /usr/local/SCIRun/bin/lib/libtcl.8.6.so(TclNRRunCallbacks+0x68) [0x7fc15d8a9038]

13. /usr/local/SCIRun/bin/lib/libtcl.8.6.so(+0x8c84f) [0x7fc15d8f684f]

14. /usr/local/SCIRun/bin/lib/libtcl.8.6.so(TclNRRunCallbacks+0x68) [0x7fc15d8a9038]

15. /usr/local/SCIRun/bin/lib/libtcl.8.6.so(TclNREvalObjv+0xa9f) [0x7fc15d8a9c3f]

16. /usr/local/SCIRun/bin/lib/libtcl.8.6.so(+0x8c834) [0x7fc15d8f6834]

17. /usr/local/SCIRun/bin/lib/libtcl.8.6.so(TclNRRunCallbacks+0x68) [0x7fc15d8a9038]

18. /usr/local/SCIRun/bin/lib/libtcl.8.6.so(+0x41773) [0x7fc15d8ab773]

19. /usr/local/SCIRun/bin/lib/libtcl.8.6.so(Tcl_Eval+0x1d) [0x7fc15d8ab8ed]

1a. /usr/local/SCIRun/bin/lib/libtk.8.6.so(+0xa641f) [0x7fc16065941f]

1b. /usr/local/SCIRun/bin/lib/libDataflow_GuiInterface.so

  in SCIRun::appInit(Tcl_Interp*)

1c. /usr/local/SCIRun/bin/lib/libtk.8.6.so(Tk_MainEx+0x1f2) [0x7fc16064a782]

1d. /usr/local/SCIRun/bin/lib/libDataflow_GuiInterface.so

  in SCIRun::TCLThread::run()

1e. /usr/local/SCIRun/bin/lib/libCore_Thread.so

  in SCIRun::Thread::run_body()

1f. /usr/local/SCIRun/bin/lib/libCore_Thread.so

  in SCIRun::run_threads(void*)

20. /usr/lib/nvidia-current/libGL.so.1(+0x9e853) [0x7fc160130853]

140468607813568:main( RUNNING, List: )

140468608038656:internal service manager(detached,  RUNNING, List: )

140468606494464:Event Manager Thread(detached,  BLOCKING, EventManager, List: )

140468397299456:Scheduler(daemon, detached,  BLOCKING, NetworkEditor request FIFO, List: )

140468397033216:TCL main event loop(detached,  RUNNING, List: )

 

Abort signalled by pid: 10741

Occured for thread: "TCL main event loop"

Exiting