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I think I have found the issue.

The planar orientation differs in the .hdr files.

-Timothy

Timothy Brown                 email: timothy@cis.jhu.edu
Computational Anatomist       phone: 410.516.7551
Center for Imaging Science    fax:   410.516.4557
Johns Hopkins University
301 Clark Hall
3400 N. Charles Street
Baltimore, MD 21218

---------- Forwarded message ----------
Date: Thu, 21 Apr 2011 16:22:58 -0400 (EDT)
From: Timothy Brown <timothy@cis.jhu.edu>
To: seg3d@sci.utah.edu
Subject: Importing a Segmentation

I would like to use Seg3D to edit a binary mask that is created outside of Seg3D. I have attempted the following:

File - Open - I open the MRI volume
File - Import Segmentation - I specify the binary mask

The binary mask and MRI both have same voxel dimensions and datatype. When the segmentation is imported, it seems to be in a different space (ie not is the same space as MRI).

I am using Seg3D 1.12.0

Thanks for any help.

-Timothy

Timothy Brown                 email: timothy@cis.jhu.edu
Computational Anatomist       phone: 410.516.7551
Center for Imaging Science    fax:   410.516.4557
Johns Hopkins University
301 Clark Hall
3400 N. Charles Street
Baltimore, MD 21218

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• [Seg3D] Importing a Segmentation (fwd), Timothy Brown, 04/21/2011

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