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- From: Ramón Casero Cañas <rcasero@gmail.com>
- To: seg3d@sci.utah.edu
- Subject: [Seg3D] Re: Re: Re: Announcing Seg3D 2.1.2
- Date: Thu, 01 Dec 2011 11:15:14 +0000
On 01/12/11 00:16, Ayla Khan wrote:
Hi Ramon,
For you, is the scirunnrrd structure the most useful structure for working in
matlab?
Hi Ayla,
The scirunnrrd structure is something I depend on because:
* it provides a way of having the image but also the spacing, offset,
etc all together
* I have already developed quite a lot of software in Geradus based on
that structure, usually Matlab functions called scinrrd_*()
See e.g.
http://code.google.com/p/gerardus/source/browse/#svn%2Ftrunk%2Fmatlab%2FFileFormatToolbox
http://code.google.com/p/gerardus/source/browse/#svn%2Ftrunk%2Fmatlab%2FFiltersToolbox
etc
* I have a lot of image processing results saved in that format
Apart from the Spline Tool not being available in Seg3D2, the scinrrd
format is what currently keeps us tied up to the old Seg3D (which is a
pain, as Seg3D has so much better 3D visualization).
On a related note, I got in touch with the NRRD folks, and they would
actually like me to change the name from scinrrd to something else, e.g.
scimat. Now I know that makes sense, as the scirunnrrd has nothing to do
with NRRD, but when I started using Seg3D, that was not clear to me.
I'm busy writing a grant application before Christmas, but after that is
done, I could think about renaming scinrrd to scimat.
However, it would also be interesting to know what you guys think on
your end, what your plans are regarding that format.
If Seg3D is saving to a new Matlab structure, and it has some kind of
flag to differentiate it from the old one, I could extend my
scinrrd_load.m
scinrrd_save.m
functions.
Cheers,
Ramon.
--
Dr. Ramón Casero Cañas
Computational Biology
Department of Computer Science
University of Oxford
Wolfson Building, Parks Rd
Oxford OX1 3QD
tlf +44 (0) 1865 610737
web
http://web.comlab.ox.ac.uk/people/Ramon.CaseroCanas
photos
http://www.flickr.com/photos/rcasero/
- [Seg3D] Re: Re: Re: Announcing Seg3D 2.1.2, Ramón Casero Cañas, 12/01/2011
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