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[Seg3D] Re: Re: Re: Fwd: problem during installation of seg3d


Chronological Thread 
  • From: Ayla Khan <ayla@sci.utah.edu>
  • To: seg3d@sci.utah.edu
  • Subject: [Seg3D] Re: Re: Re: Fwd: problem during installation of seg3d
  • Date: Thu, 9 May 2013 17:41:13 -0600
Hi Lorenzo,

I was able to build the Seg3D 2.1.5 release branch on both Kubuntu and Ubuntu 
13.04 64-bit. You're welcome to build from Subversion 
(https://code.sci.utah.edu/svn/seg3d2/branches/2.1.5), or I can prepare a 
pre-release tar archive for you. Please let me know which you would prefer.

Ayla

On May 2, 2013, at 2:31 AM, Lorenzo Grassi wrote:

> Hi Ayla,
> 
> thanks for your help. I am using the GNU C++ compiler. For the sake of 
> completeness, I report the result of the dpkg --list | grep compiler 
> command:
> 
> ii  g++ 4:4.7.3-1ubuntu10                           amd64        GNU C++ 
> compiler
> ii  g++-4.7 4.7.3-1ubuntu1                              amd64        GNU 
> C++ compiler
> ii  gcc 4:4.7.3-1ubuntu10                           amd64        GNU C 
> compiler
> ii  gcc-4.7 4.7.3-1ubuntu1                              amd64        GNU C 
> compiler
> ii  hardening-includes 2.3                                         all      
>     Makefile for enabling compiler flags for security hardening
> ii  libprotoc7 2.4.1-3ubuntu1                              amd64        
> protocol buffers compiler library
> ii  libxkbcommon0:amd64 0.2.0-0ubuntu3                              amd64   
>      library interface to the XKB compiler - shared library
> ii  protobuf-compiler 2.4.1-3ubuntu1                              amd64     
>    compiler for protocol buffer definition files
> 
> Thanks,
> Lorenzo
> 
> 
> 
> 
> 
> On 05/01/2013 03:34 AM, Ayla Khan wrote:
>> Hi Lorenzo,
>> 
>> Kubuntu is not one of our supported Linux distributions, so I'll need more 
>> information about your build environment. Can you tell me which C++ 
>> compiler you're using?
>> 
>> Thanks,
>> 
>> Ayla
>> 
>> On Apr 30, 2013, at 9:05 AM, Lorenzo Grassi wrote:
>> 
>>> Hi,
>>> 
>>> I am having troubles installing Seg3D2 (2.1.4) on Kubuntu 13.04 64-bit.
>>> After installing the required dependencies, I execute the ./build.sh
>>> --release command.
>>> The Cmake part went fine, but during the make phase I got this error:
>>> 
>>> [ 1%] Built target zlib
>>> [ 1%] Built target MatlabIO
>>> [ 2%] Built target libpng12
>>> [ 11%] Built target teem
>>> [ 11%] Built target glew
>>> [ 12%] Built target freetype
>>> [ 12%] Built target tinyxml
>>> [ 12%] Built target sqlite
>>> [ 12%] Built target gdcmuuid
>>> [ 14%] Built target gdcmjpeg8
>>> [ 16%] Built target gdcmjpeg12
>>> [ 18%] Built target gdcmjpeg16
>>> [ 18%] Built target gdcmexpat
>>> [ 19%] Built target gdcmopenjpeg
>>> [ 20%] Built target gdcmCommon
>>> [ 21%] Built target gdcmDSED
>>> [ 22%] Built target gdcmIOD
>>> [ 22%] Built target gdcmDICT
>>> [ 24%] Built target gdcmMSFF
>>> [ 25%] Built target itksys
>>> [ 27%] Built target itkjpeg8
>>> [ 29%] Built target itkjpeg12
>>> [ 31%] Built target itkjpeg16
>>> [ 31%] Built target itkzlib
>>> [ 31%] Built target itkpng
>>> [ 32%] Built target itktiff
>>> [ 33%] Built target itkopenjpeg
>>> [ 34%] Built target ITKMetaIO
>>> [ 35%] Built target ITKNrrdIO
>>> [ 35%] Built target ITKEXPAT
>>> [ 35%] Built target ITKznz
>>> [ 35%] Built target ITKniftiio
>>> [ 35%] Built target ITKDICOMParser
>>> [ 35%] Built target itkvcl
>>> [ 44%] Built target itkv3p_netlib
>>> [ 44%] Building CXX object
>>> Externals/itk/Utilities/vxl/core/vnl/CMakeFiles/itkvnl.dir/Templates/vnl_matrix_fixed_ref+float.3.3-.o
>>> In file included from
>>> /home/lorenzo/Software/Seg3D2-2.1.4-code/src/Externals/itk/Utilities/vxl/core/vnl/vnl_matrix_fixed_ref.txx:5:0,
>>> from
>>> /home/lorenzo/Software/Seg3D2-2.1.4-code/src/Externals/itk/Utilities/vxl/core/vnl/Templates/vnl_matrix_fixed_ref+float.3.3-.cxx:1:
>>> /home/lorenzo/Software/Seg3D2-2.1.4-code/src/Externals/itk/Utilities/vxl/core/vnl/vnl_matrix_fixed_ref.h:
>>> In instantiation of ‘bool vnl_matrix_fixed_ref<T, num_rows,
>>> num_cols>::operator_eq(const vnl_matrix_fixed_ref_const<T, num_rows,
>>> num_cols>&) const [with T = float; unsigned int num_rows = 3u; unsigned
>>> int num_cols = 3u]’:
>>> /home/lorenzo/Software/Seg3D2-2.1.4-code/src/Externals/itk/Utilities/vxl/core/vnl/Templates/vnl_matrix_fixed_ref+float.3.3-.cxx:2:1:
>>> required from here
>>> /home/lorenzo/Software/Seg3D2-2.1.4-code/src/Externals/itk/Utilities/vxl/core/vnl/vnl_matrix_fixed_ref.h:657:56:
>>> error: ‘equal’ was not declared in this scope, and no declarations were
>>> found by argument-dependent lookup at the point of instantiation
>>> [-fpermissive]
>>> /home/lorenzo/Software/Seg3D2-2.1.4-code/src/Externals/itk/Utilities/vxl/core/vnl/vnl_matrix_fixed_ref.h:657:56:
>>> note: declarations in dependent base ‘vnl_matrix_fixed_ref_const<float,
>>> 3u, 3u>’ are not found by unqualified lookup
>>> /home/lorenzo/Software/Seg3D2-2.1.4-code/src/Externals/itk/Utilities/vxl/core/vnl/vnl_matrix_fixed_ref.h:657:56:
>>> note: use ‘this->equal’ instead
>>> make[2]: ***
>>> [Externals/itk/Utilities/vxl/core/vnl/CMakeFiles/itkvnl.dir/Templates/vnl_matrix_fixed_ref+float.3.3-.o]
>>> Error 1
>>> make[1]: ***
>>> [Externals/itk/Utilities/vxl/core/vnl/CMakeFiles/itkvnl.dir/all] Error 2
>>> make: *** [all] Error 2
>>> 
>>> 
>>> 
>>> Can you please help me fixing this error?
>>> 
>>> Thanks in advance,
>>> Lorenzo Grassi
>>> 
>>> 
>>> 
> 


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