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Hi guys,
is it possible to make seg3d compile without HDF5 ???
It's been years I have issues compiling seg3d.
Good I don't need it that much. But it is silly !


On Fri, May 22, 2015 at 9:59 PM, Michael Morehead <mmorehea@mix.wvu.edu>
wrote:
> Thanks Alan!
>
> Worked like a charm.
>
> Michael
> WVU Center for Neuroscience
>
> On Fri, May 22, 2015 at 3:38 PM, Alan Morris <alan.morris@carma.utah.edu>
> wrote:
>>
>> Have a look at this:
>>
>>
>> http://hdf-forum.184993.n3.nabble.com/CMake-misconfiguration-on-Linux-3-0-td3430735.html
>>
>> If you edit the file:
>> seg3d2/src/Externals/hdf5/config/cmake/ConfigureChecks.cmake
>>
>> as described above, you should get around that error.
>>
>> Alan
>>
>>
>> On Fri, May 22, 2015 at 1:13 PM, <mmorehea@mix.wvu.edu> wrote:
>>>
>>> Similar to another post here in the archive. I'm compiling with gcc 4.6
>>> and g+
>>> +-4.6, but this still happens. Any advice?
>>>
>>> [ 60%] Building C object Externals/hdf5/src/CMakeFiles/hdf5.dir/H5E.c.o
>>> /home/gauss/Seg3D2-2.1.5-code/src/Externals/hdf5/src/H5E.c: In function
>>> ‘H5Epush2’:
>>> /home/gauss/Seg3D2-2.1.5-code/src/Externals/hdf5/src/H5E.c:1351:5:
>>> warning:
>>> implicit declaration of function ‘vasprintf’
>>> [-Wimplicit-function-declaration]
>>> [ 60%] Building C object
>>> Externals/hdf5/src/CMakeFiles/hdf5.dir/H5Edeprec.c.o
>>> [ 60%] Building C object
>>> Externals/hdf5/src/CMakeFiles/hdf5.dir/H5Eint.c.o
>>> /home/gauss/Seg3D2-2.1.5-code/src/Externals/hdf5/src/H5Eint.c: In
>>> function
>>> ‘H5E_printf_stack’:
>>> /home/gauss/Seg3D2-2.1.5-code/src/Externals/hdf5/src/H5Eint.c:724:5:
>>> warning:
>>> implicit declaration of function ‘vasprintf’
>>> [-Wimplicit-function-declaration]
>>> [ 60%] Building C object Externals/hdf5/src/CMakeFiles/hdf5.dir/H5F.c.o
>>> /home/gauss/Seg3D2-2.1.5-code/src/Externals/hdf5/src/H5F.c: In function
>>> ‘H5F_build_actual_name’:
>>> /home/gauss/Seg3D2-2.1.5-code/src/Externals/hdf5/src/H5F.c:2219:9:
>>> warning:
>>> implicit declaration of function ‘lstat’
>>> [-Wimplicit-function-declaration]
>>> /home/gauss/Seg3D2-2.1.5-code/src/Externals/hdf5/src/H5F.c:2223:12:
>>> error:
>>> ‘S_IFLNK’ undeclared (first use in this function)
>>> /home/gauss/Seg3D2-2.1.5-code/src/Externals/hdf5/src/H5F.c:2223:12: note:
>>> each
>>> undeclared identifier is reported only once for each function it appears
>>> in
>>> /home/gauss/Seg3D2-2.1.5-code/src/Externals/hdf5/src/H5F.c:2223:38:
>>> error:
>>> ‘S_IFMT’ undeclared (first use in this function)
>>> /home/gauss/Seg3D2-2.1.5-code/src/Externals/hdf5/src/H5F.c:2228:27:
>>> error:
>>> ‘PATH_MAX’ undeclared (first use in this function)
>>> make[2]: *** [Externals/hdf5/src/CMakeFiles/hdf5.dir/H5F.c.o] Error 1
>>> make[1]: *** [Externals/hdf5/src/CMakeFiles/hdf5.dir/all] Error 2
>>> make: *** [all] Error 2
>>>
>>>
>>> Thanks!
>>> M
>>
>>
>



--
All the best,
Petar Petrov
http://ppetrov.net

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• [Seg3D] Ubuntu 14.04 build crash., mmorehea, 05/22/2015
  • Re: [Seg3D] Ubuntu 14.04 build crash., Alan Morris, 05/22/2015
    • Re: [Seg3D] Ubuntu 14.04 build crash., Michael Morehead, 05/22/2015
      • Re: [Seg3D] Ubuntu 14.04 build crash., Petar Petrov, 05/26/2015

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