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Wouter,

my solution on CentOS 6 was to purge everything from my PATH except the
compiler. I believe the problem is that CMake is picking up CentOS 6’s python
libraries, binaries and includes. Hope this works for you too.

Dan.

> On 29 Apr 2016, at 10:22 AM, wouter.vanputte@ugent.be wrote:
>
> Dear,
>
> i am having problems installing seg3D on a Centos computer (CentOS Linux
> release 7.1.1503 (Core)). I have installed all the required packages: gcc
> (gcc-4.8.5-4.el7.x86_64), cmake (cmake-2.8.11-5.el7.x86_64), git
> (git-1.8.3.1-
> 4.el7.x86_64). I saw someone else had the same problem, but I could not see
> how he resolved it.
>
> output:
>
> /home/woutervp/EMsoftware/Seg3D-2.3.1/bin/Externals/Source/Boost_external/lib/
> libboost_python-
> mt.a(function_doc_signature.o):function_doc_signature.cpp:(.text+0x118f):
> more
> undefined references to `PyInt_FromLong' follow
> /home/woutervp/EMsoftware/Seg3D-2.3.1/bin/Externals/Source/Boost_external/lib/
> libboost_python-mt.a(function_doc_signature.o): In function
> `boost::python::tuple boost::python::make_tuple<boost::python::str,
> boost::python::api::object, boost::python::str, boost::python::str,
> boost::python::str, std::string>(boost::python::str const&,
> boost::python::api::object const&, boost::python::str const&,
> boost::python::str const&, boost::python::str const&, std::string const&)':
> function_doc_signature.cpp:(.text._ZN5boost6python10make_tupleINS0_3strENS0_3api6objectES2_S2_S2_SsEENS0_5tupleERKT_RKT0_RKT1_RKT2_RKT3_RKT4_[_ZN5boost6python10make_tupleINS0_3strENS0_3api6objectES2_S2_S2_SsEENS0_5tupleERKT_RKT0_RKT1_RKT2_RKT3_RKT4_]
> +0xd2): undefined reference to `PyString_FromStringAndSize'
> /home/woutervp/EMsoftware/Seg3D-2.3.1/bin/Externals/Source/Boost_external/lib/
> libboost_python-mt.a(function_doc_signature.o): In function
> `boost::python::tuple boost::python::make_tuple<boost::python::api::object,
> boost::python::str, boost::python::str, boost::python::str, std::string,
> boost::python::str>(boost::python::api::object const&, boost::python::str
> const&, boost::python::str const&, boost::python::str const&, std::string
> const&, boost::python::str const&)':
> function_doc_signature.cpp:(.text._ZN5boost6python10make_tupleINS0_3api6objectENS0_3strES4_S4_SsS4_EENS0_5tupleERKT_RKT0_RKT1_RKT2_RKT3_RKT4_[_ZN5boost6python10make_tupleINS0_3api6objectENS0_3strES4_S4_SsS4_EENS0_5tupleERKT_RKT0_RKT1_RKT2_RKT3_RKT4_]
> +0xb2): undefined reference to `PyString_FromStringAndSize'
> /home/woutervp/EMsoftware/Seg3D-2.3.1/bin/Externals/Source/Boost_external/lib/
> libboost_python-mt.a(registry.o): In function
> `boost::python::converter::registration::to_python(void const volatile*)
> const':
> registry.cpp:(.text+0x215): undefined reference to `PyString_FromFormat'
> collect2: error: ld returned 1 exit status
> make[5]: *** [Seg3D2] Error 1
> make[4]: *** [Main/CMakeFiles/Seg3D2.dir/all] Error 2
> make[3]: *** [all] Error 2
> make[2]: *** [Externals/Stamp/Seg3D_external/Seg3D_external-build] Error 2
> make[1]: *** [CMakeFiles/Seg3D_external.dir/all] Error 2
> make: *** [all] Error 2
> Building Seg3D returned an error
>
> Either the code failed to build properly or
>
> the testing programs failed to complete without
>
> every single test program passing the test.
>
> What should I do?
>
> best wishes,
>
> Wouter
> _______________________________________________
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> http://www.sci.utah.edu/software/seg3d.html
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> in the message body.

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• [Seg3D] Centos Build problem, wouter.vanputte, 04/29/2016
  • Re: [Seg3D] Centos Build problem, Duke, Daniel J., 04/29/2016

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