On Dec 19, 2023, at 9:57 AM, Beroukhim, Rebecca <Rebecca.Beroukhim@CARDIO.CHBOSTON.ORG> wrote:

Dear Shireen,

 

Thank you for your earlier suggestions. We are really excited about the output.

 

We have been running into one issue – we would like to export videos of the variance across each mode at various angles (similar to the gif shown here). Do you have any suggestions? Isabel could perhaps be more specific in terms of how the animations we need are referenced in the software.

 

Thank you

Rebecca

 

From: Shireen Elhabian <shireen@sci.utah.edu>
Sent: Tuesday, October 17, 2023 6:33 PM
To: Beroukhim, Rebecca <Rebecca.Beroukhim@CARDIO.CHBOSTON.ORG>
Cc: Shireen Elhabian <shireen@sci.utah.edu>; shapeworks-users@sci.utah.edu; Barnet, Isabel <ibarnet@hms.harvard.edu>; Alan Morris <amorris@sci.utah.edu>
Subject: Re: Shapeworks [EXTERNAL]

 

* External Email - Caution *

 

Hi Rebecca,

 

The question is a bit ambiguous. Are you referring to the corresponding particles, or the various analytical outcomes? This could include reconstructed shapes, PCA loadings, or DeepSSM results.

 

To best address this, I'd suggest checking out the analysis documentation page.

http://sciinstitute.github.io/ShapeWorks/latest/studio/studio-analyze.html

 

Please let us know if you have further questions.

 

Regards
Shireen


------------------------------------------
Shireen Elhabian, M.Sc., Ph.D.
Associate Professor of Computer Science 
Scientific Computing and Imaging Institute
Kahlert School of Computing
University of Utah
WEB 3608
72 Central Campus Drive, Salt Lake City, UT, 84112
Phone (801) 581-5982

Fax (801) 585-6513
Home Page: http://www.sci.utah.edu/~shireen

On Oct 17, 2023, at 11:11 AM, Beroukhim, Rebecca <Rebecca.Beroukhim@CARDIO.CHBOSTON.ORG> wrote:

 

Hi, we are wondering if you have a user manual for Shapeworks that includes a description of the output?

 

Thank you

Rebecca 

 

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