Hi Petar,

It looks like you are trying to mesh a thin region of tissue. These kind of regions always cause trouble for meshing software.  You can improve the results by increasing the resolution of the background mesh.  You can try changing the scaling factor to do this, or you can resample the segmentation in Seg3D.

cheers,
Jess

> On Oct 2, 2017, at 3:02 AM, Petar Petrov <pip010@gmail.com> wrote:
>
>
> Hello all,
>
> when I generate a mesh using cleaver2 I get alot of errors of wrong tet element orientation. Those get fixed by cleaver when you pass the -j flag
>
> The mesh is generated and I can successfully load in scirun, however when using the getFieldBoundary/GetDomainBoundary the following surface mesh is produced with plenty of holes :(
>
> Any idea how I can fix that?
>

> <MyImage.jpg>