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[SCIRUN-USERS] Matlab toolbox to work with NRRD volumes saved to .mat files


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  • From: Ramón Casero Cañas <ramon.casero@comlab.ox.ac.uk>
  • To: Mailing list SCIRun <scirun-users@sci.utah.edu>
  • Subject: [SCIRUN-USERS] Matlab toolbox to work with NRRD volumes saved to .mat files
  • Date: Sat, 20 Feb 2010 00:12:58 +0000

Hi,

I have been doing some work with Seg3D, and one of the things I have found useful is to save data or segmentation volumes to Matlab format, and then load the scirunnrrd struct in Matlab and work with it.

As a consequence, I have started developing some Matlab functions in project Gerardus. This is early work, but maybe somebody is interested.

The functions available so far do things like squeeze the dummy dimension, intersect a volume by a plane, convert indices to real world coordinates, rotate a segmentation to make it vertical...

The code is released under the GPL v3, and can be found here

http://code.google.com/p/gerardus/source/browse/#svn/trunk/matlab

Best regards,

Ramon.

--
Dr. Ramón Casero Cañas

Computational Biology
Computing Laboratory
University of Oxford
Wolfson Building, Parks Rd
Oxford OX1 3QD

tlf     +44 (0) 1865 610807
web     http://web.comlab.ox.ac.uk/people/Ramon.CaseroCanas
photos  http://www.flickr.com/photos/rcasero/

  • [SCIRUN-USERS] Matlab toolbox to work with NRRD volumes saved to .mat files, Ramón Casero Cañas, 02/19/2010

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