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Hi all!

Any news about that issue? I have to use Ubuntu 11.04 as well. Using former versions is often not an option as other things won't work then...

Greets, Felix

Am 02.08.2011 05:15, schrieb Ayla Khan:

Hi Donghyeon,

I was able to reproduce the problem, and will work on tracking down the
problem. In the meanwhile, since Ubuntu 11.04 is still in beta, Ubuntu
10 will continue to be the officially supported version.

Ayla

On Jul 30, 2011, at 5:43 PM, Donghyeon Kim wrote:

Hi,
I cannot run scirun on ubuntu 11.04 because of error
First try was scirun 4.4 but i fail to run it. So i compile scirun 4.3
, it also fail
errors were same among 4.4 and 4.3
how should i do?
root@danielkim-Vostro-430:/usr/local/SCIRun/bin# ./scirun
../src/nets/Samples/isocontour.srn
SCIRun version 4.3 revision
*** buffer overflow detected ***: ./scirun terminated
======= Backtrace: =========
/lib/x86_64-linux-gnu/libc.so.6(__fortify_fail+0x37)[0x7fc15cea11d7]
/lib/x86_64-linux-gnu/libc.so.6(+0xfd0f0)[0x7fc15cea00f0]
/usr/local/SCIRun/bin/lib/libtcl.8.6.so(+0xec8b2)[0x7fc15d9568b2]
/usr/local/SCIRun/bin/lib/libtcl.8.6.so(+0xeccc8)[0x7fc15d956cc8]
/usr/local/SCIRun/bin/lib/libtcl.8.6.so(TclNRRunCallbacks+0x68)[0x7fc15d8a9038]
/usr/local/SCIRun/bin/lib/libtcl.8.6.so(+0x8c84f)[0x7fc15d8f684f]
/usr/local/SCIRun/bin/lib/libtcl.8.6.so(TclNRRunCallbacks+0x68)[0x7fc15d8a9038]
/usr/local/SCIRun/bin/lib/libtcl.8.6.so(+0x59918)[0x7fc15d8c3918]
/usr/local/SCIRun/bin/lib/libtcl.8.6.so(TclNRRunCallbacks+0x68)[0x7fc15d8a9038]
/usr/local/SCIRun/bin/lib/libtcl.8.6.so(+0x4132f)[0x7fc15d8ab32f]
/usr/local/SCIRun/bin/lib/libtcl.8.6.so(Tcl_FSEvalFileEx+0x22e)[0x7fc15d91c42e]
/usr/local/SCIRun/bin/lib/libtcl.8.6.so(+0x58e2b)[0x7fc15d8c2e2b]
/usr/local/SCIRun/bin/lib/libtcl.8.6.so(TclNRRunCallbacks+0x68)[0x7fc15d8a9038]
/usr/local/SCIRun/bin/lib/libtcl.8.6.so(+0x8c84f)[0x7fc15d8f684f]
/usr/local/SCIRun/bin/lib/libtcl.8.6.so(TclNRRunCallbacks+0x68)[0x7fc15d8a9038]
/usr/local/SCIRun/bin/lib/libtcl.8.6.so(TclNREvalObjv+0xa9f)[0x7fc15d8a9c3f]
/usr/local/SCIRun/bin/lib/libtcl.8.6.so(+0x8c834)[0x7fc15d8f6834]
/usr/local/SCIRun/bin/lib/libtcl.8.6.so(TclNRRunCallbacks+0x68)[0x7fc15d8a9038]
/usr/local/SCIRun/bin/lib/libtcl.8.6.so(+0x41773)[0x7fc15d8ab773]
/usr/local/SCIRun/bin/lib/libtcl.8.6.so(Tcl_Eval+0x1d)[0x7fc15d8ab8ed]
/usr/local/SCIRun/bin/lib/libtk.8.6.so(+0xa641f)[0x7fc16065941f]
/usr/local/SCIRun/bin/lib/libDataflow_GuiInterface.so(_ZN6SCIRun7appInitEP10Tcl_Interp+0x28)[0x7fc161ea2fd8]
/usr/local/SCIRun/bin/lib/libtk.8.6.so(Tk_MainEx+0x1f2)[0x7fc16064a782]
/usr/local/SCIRun/bin/lib/libDataflow_GuiInterface.so(_ZN6SCIRun9TCLThread3runEv+0x6c)[0x7fc161ea2e4c]
/usr/local/SCIRun/bin/lib/libCore_Thread.so(_ZN6SCIRun6Thread8run_bodyEv+0x17)[0x7fc1629a7957]
/usr/local/SCIRun/bin/lib/libCore_Thread.so(_ZN6SCIRun11run_threadsEPv+0x9d)[0x7fc1629afadd]
/usr/lib/nvidia-current/libGL.so.1(+0x9e853)[0x7fc160130853]
======= Memory map: ========
00400000-0040e000 r-xp 00000000 08:01 13257505
/usr/local/SCIRun/bin/scirun
0060d000-0060e000 r--p 0000d000 08:01 13257505
/usr/local/SCIRun/bin/scirun
0060e000-0060f000 rw-p 0000e000 08:01 13257505
/usr/local/SCIRun/bin/scirun
020f8000-022b1000 rw-p 00000000 00:00 0 [heap]
7fc15758c000-7fc157598000 r-xp 00000000 08:01 1183404
/lib/x86_64-linux-gnu/libnss_files-2.13.so
7fc157598000-7fc157797000 ---p 0000c000 08:01 1183404
/lib/x86_64-linux-gnu/libnss_files-2.13.so
7fc157797000-7fc157798000 r--p 0000b000 08:01 1183404
/lib/x86_64-linux-gnu/libnss_files-2.13.so
7fc157798000-7fc157799000 rw-p 0000c000 08:01 1183404
/lib/x86_64-linux-gnu/libnss_files-2.13.so
7fc157799000-7fc1577a4000 r-xp 00000000 08:01 1183408
/lib/x86_64-linux-gnu/libnss_nis-2.13.so
7fc1577a4000-7fc1579a3000 ---p 0000b000 08:01 1183408
/lib/x86_64-linux-gnu/libnss_nis-2.13.so
7fc1579a3000-7fc1579a4000 r--p 0000a000 08:01 1183408
/lib/x86_64-linux-gnu/libnss_nis-2.13.so
7fc1579a4000-7fc1579a5000 rw-p 0000b000 08:01 1183408
/lib/x86_64-linux-gnu/libnss_nis-2.13.so
7fc1579a5000-7fc1579bc000 r-xp 00000000 08:01 1183398
/lib/x86_64-linux-gnu/libnsl-2.13.so
7fc1579bc000-7fc157bbb000 ---p 00017000 08:01 1183398
/lib/x86_64-linux-gnu/libnsl-2.13.so
7fc157bbb000-7fc157bbc000 r--p 00016000 08:01 1183398
/lib/x86_64-linux-gnu/libnsl-2.13.so
7fc157bbc000-7fc157bbd000 rw-p 00017000 08:01 1183398
/lib/x86_64-linux-gnu/libnsl-2.13.so
7fc157bbd000-7fc157bbf000 rw-p 00000000 00:00 0
7fc157bbf000-7fc157bc7000 r-xp 00000000 08:01 1183400
/lib/x86_64-linux-gnu/libnss_compat-2.13.so
7fc157bc7000-7fc157dc6000 ---p 00008000 08:01 1183400
/lib/x86_64-linux-gnu/libnss_compat-2.13.so
7fc157dc6000-7fc157dc7000 r--p 00007000 08:01 1183400
/lib/x86_64-linux-gnu/libnss_compat-2.13.so
7fc157dc7000-7fc157dc8000 rw-p 00008000 08:01 1183400
/lib/x86_64-linux-gnu/libnss_compat-2.13.so
7fc157dc8000-7fc157dc9000 ---p 00000000 00:00 0
7fc157dc9000-7fc1585c9000 rw-p 00000000 00:00 0
7fc1585c9000-7fc158d84000 r--p 00000000 08:01 11017199
/usr/lib/locale/locale-archive
7fc158d84000-7fc158d85000 ---p 00000000 00:00 0
7fc158d85000-7fc158e85000 rw-p 00000000 00:00 0
7fc158e85000-7fc158e86000 ---p 00000000 00:00 0
7fc158e86000-7fc158ec6000 rw-p 00000000 00:00 0
7fc158ec6000-7fc158ed7000 r-xp 00000000 08:01 15601966
/usr/local/SCIRun/bin/lib/libPackages_MatlabInterface_Services.so
7fc158ed7000-7fc1590d6000 ---p 00011000 08:01 15601966
/usr/local/SCIRun/bin/lib/libPackages_MatlabInterface_Services.so
7fc1590d6000-7fc1590d7000 r--p 00010000 08:01 15601966
/usr/local/SCIRun/bin/lib/libPackages_MatlabInterface_Services.so
7fc1590d7000-7fc1590d8000 rw-p 00011000 08:01 15601966
/usr/local/SCIRun/bin/lib/libPackages_MatlabInterface_Services.so
7fc1590d8000-7fc1590eb000 r-xp 00000000 08:01 15601970
/usr/local/SCIRun/bin/lib/libCore_Algorithms_Util.so
7fc1590eb000-7fc1592ea000 ---p 00013000 08:01 15601970
/usr/local/SCIRun/bin/lib/libCore_Algorithms_Util.so
7fc1592ea000-7fc1592eb000 r--p 00012000 08:01 15601970
/usr/local/SCIRun/bin/lib/libCore_Algorithms_Util.so
7fc1592eb000-7fc1592ec000 rw-p 00013000 08:01 15601970
/usr/local/SCIRun/bin/lib/libCore_Algorithms_Util.so
7fc1592ec000-7fc15938e000 r-xp 00000000 08:01 15602254
/usr/local/SCIRun/bin/lib/libCore_Algorithms_Converter.so
7fc15938e000-7fc15958d000 ---p 000a2000 08:01 15602254
/usr/local/SCIRun/bin/lib/libCore_Algorithms_Converter.so
7fc15958d000-7fc15958e000 r--p 000a1000 08:01 15602254
/usr/local/SCIRun/bin/lib/libCore_Algorithms_Converter.so
7fc15958e000-7fc15958f000 rw-p 000a2000 08:01 15602254
/usr/local/SCIRun/bin/lib/libCore_Algorithms_Converter.so
7fc15958f000-7fc1595a2000 r-xp 00000000 08:01 15602147
/usr/local/SCIRun/bin/lib/libCore_Algorithms_DataIO.so
Thread "TCL main event loop" (id: 140468397033216, pid: 10741)
caught signal SIGABRT (Abort)
...handle_abort_signals...
niceAbort
Backtrace:
1. /usr/local/SCIRun/bin/lib/libCore_Thread.so
in SCIRun::handle_abort_signals(int, siginfo*, void*)
2. /lib/x86_64-linux-gnu/libpthread.so.0(+0xfc60) [0x7fc15dbd9c60]
3. /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x35) [0x7fc15cdd6d05]
4. /lib/x86_64-linux-gnu/libc.so.6(abort+0x186) [0x7fc15cddaab6]
5. /lib/x86_64-linux-gnu/libc.so.6(+0x6cd7b) [0x7fc15ce0fd7b]
6. /lib/x86_64-linux-gnu/libc.so.6(__fortify_fail+0x37) [0x7fc15cea11d7]
7. /lib/x86_64-linux-gnu/libc.so.6(+0xfd0f0) [0x7fc15cea00f0]
8. /usr/local/SCIRun/bin/lib/libtcl.8.6.so(+0xec8b2) [0x7fc15d9568b2]
9. /usr/local/SCIRun/bin/lib/libtcl.8.6.so(+0xeccc8) [0x7fc15d956cc8]
a. /usr/local/SCIRun/bin/lib/libtcl.8.6.so(TclNRRunCallbacks+0x68)
[0x7fc15d8a9038]
b. /usr/local/SCIRun/bin/lib/libtcl.8.6.so(+0x8c84f) [0x7fc15d8f684f]
c. /usr/local/SCIRun/bin/lib/libtcl.8.6.so(TclNRRunCallbacks+0x68)
[0x7fc15d8a9038]
d. /usr/local/SCIRun/bin/lib/libtcl.8.6.so(+0x59918) [0x7fc15d8c3918]
e. /usr/local/SCIRun/bin/lib/libtcl.8.6.so(TclNRRunCallbacks+0x68)
[0x7fc15d8a9038]
f. /usr/local/SCIRun/bin/lib/libtcl.8.6.so(+0x4132f) [0x7fc15d8ab32f]
10. /usr/local/SCIRun/bin/lib/libtcl.8.6.so(Tcl_FSEvalFileEx+0x22e)
[0x7fc15d91c42e]
11. /usr/local/SCIRun/bin/lib/libtcl.8.6.so(+0x58e2b) [0x7fc15d8c2e2b]
12. /usr/local/SCIRun/bin/lib/libtcl.8.6.so(TclNRRunCallbacks+0x68)
[0x7fc15d8a9038]
13. /usr/local/SCIRun/bin/lib/libtcl.8.6.so(+0x8c84f) [0x7fc15d8f684f]
14. /usr/local/SCIRun/bin/lib/libtcl.8.6.so(TclNRRunCallbacks+0x68)
[0x7fc15d8a9038]
15. /usr/local/SCIRun/bin/lib/libtcl.8.6.so(TclNREvalObjv+0xa9f)
[0x7fc15d8a9c3f]
16. /usr/local/SCIRun/bin/lib/libtcl.8.6.so(+0x8c834) [0x7fc15d8f6834]
17. /usr/local/SCIRun/bin/lib/libtcl.8.6.so(TclNRRunCallbacks+0x68)
[0x7fc15d8a9038]
18. /usr/local/SCIRun/bin/lib/libtcl.8.6.so(+0x41773) [0x7fc15d8ab773]
19. /usr/local/SCIRun/bin/lib/libtcl.8.6.so(Tcl_Eval+0x1d)
[0x7fc15d8ab8ed]
1a. /usr/local/SCIRun/bin/lib/libtk.8.6.so(+0xa641f) [0x7fc16065941f]
1b. /usr/local/SCIRun/bin/lib/libDataflow_GuiInterface.so
in SCIRun::appInit(Tcl_Interp*)
1c. /usr/local/SCIRun/bin/lib/libtk.8.6.so(Tk_MainEx+0x1f2)
[0x7fc16064a782]
1d. /usr/local/SCIRun/bin/lib/libDataflow_GuiInterface.so
in SCIRun::TCLThread::run()
1e. /usr/local/SCIRun/bin/lib/libCore_Thread.so
in SCIRun::Thread::run_body()
1f. /usr/local/SCIRun/bin/lib/libCore_Thread.so
in SCIRun::run_threads(void*)
20. /usr/lib/nvidia-current/libGL.so.1(+0x9e853) [0x7fc160130853]
140468607813568:main( RUNNING, List: )
140468608038656:internal service manager(detached, RUNNING, List: )
140468606494464:Event Manager Thread(detached, BLOCKING, EventManager,
List: )
140468397299456:Scheduler(daemon, detached, BLOCKING, NetworkEditor
request FIFO, List: )
140468397033216:TCL main event loop(detached, RUNNING, List: )
Abort signalled by pid: 10741
Occured for thread: "TCL main event loop"
Exiting




                
--------------------------------------------------
DONGHYEON KIM, MS. Student
Dept. of Info. & Comm., Gwangju Institute of Science and Technology(GIST)
261 Cheomdan-gwagiro, Buk-gu, Gwangju 500-712, South Korea
Tel: +82-62-715-2266 Cell: +82-10-9361-3781
E-mail:danielkim@gist.ac.kr
<mailto:danielkim@gist.ac.kr>URL:http://biocomput.gist.ac.kr

--
 Dipl.-Math. Felix Lucka
 e-mail: felix.lucka@uni-muenster.de

 Workgroup Imaging, Prof. Dr. Martin Burger
Institute for Computational and Applied Mathematics, University of Muenster
 www: http://wwwmath.uni-muenster.de/num/burger/organization/lucka

 Workgroup Methods in Bioelectromagnetism, PD. Dr. Carsten Wolters      
 Institute for Biomagnetism and Biosignalanalysis, University of Muenster
 www: http://campus.uni-muenster.de/index.php?id=919&L=1

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• [SCIRUN-USERS] Re: Re: I cannot run scirun, Felix Lucka, 10/13/2011

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