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- From: Petar Petrov <pip010@gmail.com>
- To: Ayla Khan <ayla@sci.utah.edu>
- Cc: "scirun-users@sci.utah.edu List" <scirun-users@sci.utah.edu>, Erik Jorgensen <erikj@sci.utah.edu>, Nathan Galli <nathang@sci.utah.edu>
- Subject: [SCIRUN-USERS] Re: Announcing SCIRun 4.7 with BioMesh3D
- Date: Fri, 15 Nov 2013 14:30:46 +0100
Hi Ayla,
good to hear. I've already deployed 4.7 on debian with mesaGL.
Since, I'm back using SCIRun, this time for my PhD. Expect more bug
reports soon :)
Already, I have some issues. Not sure if directly SCIRun related.
I'm using a server rag with 16CPUs , handy for BioMesh3D, but has an
arcane video card, ala ATI Rage !!!
What we try is to remotely ssh to the machine and have the X session
on a local linux PC , hopefully utilizing the rendering capabilities
of the local GPU.
The thing is, it works fine when ssh from yet another remote machine
(CentOS) to it, but not in the case of local Debian machine with ssh -
X name.domain.com
The result is quite unexpected, at least to me, scirun runs, I load a
net, I run it, no error in ReadField module, but when I open the 3D
Window, all I see is the origin and no data (field or any other mesh I
tried) simply doesn't show :(
I will appreciate if anyone has a slight idea what might cause such
behavior and all thogether give me some tips of what's best in my
situation.
Cheers and greets to the community,
Petar
On Thu, Nov 14, 2013 at 8:27 PM, Ayla Khan <ayla@sci.utah.edu> wrote:
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Dear SCIRun users,
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We are pleased to announce the release of SCIRun 4.7 with meshing tools.
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SCIRun 4.7 is available as a binary download for Windows and OS X, and as a
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source download for Linux.
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The new binaries and source tar archives can be downloaded from:
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http://www.scirun.org
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Click on the Download button and then select the distribution for your
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platform.
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Release notes are available from:
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http://www.sci.utah.edu/releases/scirun_v4.7/.RELEASE_NOTES.txt
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SCIRun 4.7 is primarily a bug-fix release with one new module,
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BuildTDCSMatrix, added to the SCIRun package.
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SCIRun 4.7 also contains the new ECGToolkit, which is a collection of
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software tools and example SCIRun networks for solving forward and inverse
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problems in electrocardiography. Special documentation is available to
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describe these tools and their use. The tools feature BEM and FEM solvers
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for most of the important cases of activation-based and potential-based
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source models and a number of inverse solution methods. Some of the code is
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written in Matlab and connects with SCIRun through our interface module, and
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some functionality depends on ECGSim, a free package distributed separately,
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and which is available from http://www.ecgsim.org.
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SCIRun 4.7 and BioMesh3D ON OSX:
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For OS X, there is a binary distribution for intel-based Macs. The binary
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download provides both the SCIRun application as well as the BioMesh3D
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application, which is a drag and drop application for building meshes.
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Documentation on running the OS X application is provided inside the SCIRun
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4.7 disk image.
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SCIRun 4.7 and BioMesh3D ON WINDOWS:
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For Windows there are binaries available as well. Currently BioMesh3D is
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installed together with SCIRun in the SCIRun 4.7 directory. Currently Python
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(either version 2 or 3) needs to be installed separately on Windows in order
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to run BioMesh3D, and BioMesh3D needs to be run from the command prompt.
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More details can be found in the BioMesh3D documentation.
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SCIRun 4.7 and BioMesh3D ON LINUX:
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Please download the SCIRun 4.7 source tar archive. After unpacking the
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application, run the build script called build.sh, which should build both
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SCIRun 4.7 and BioMesh3D. On Linux, BioMesh3D is a series of python scripts
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that run various SCIRun applications to build a tetrahedral mesh.
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Documentation is provided inside the tar archive which explains how to build
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meshes with BioMesh3D.
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As we want to keep improving our software, suggestions and bug reports are
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always welcome. Please contact us at scirun-users@sci.utah.edu with general
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SCIRun questions or scirun-develop@sci.utah.edu with any specific problems
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you encounter.
--
All the best,
Petar Petrov
http://ppetrov.net
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