SCIRun User Mailing List

Text archives Help


[SCIRUN-USERS] Biomesh 3D question


Chronological Thread 
  • From: Elizabeth Jurrus <liz@sci.utah.edu>
  • To: scirun-users@sci.utah.edu, pg0222@gmail.com
  • Subject: [SCIRUN-USERS] Biomesh 3D question
  • Date: Tue, 18 Nov 2014 12:32:55 -0700
Forwarding to scirun-users.
- liz


-------- Forwarded Message -------- Subject: Message distribution: Authorization denied Date: Tue, 18 Nov 2014 14:02:02 -0500 From: Purbasha Garai <pg0222@gmail.com> To: scirun-users-request@sci.utah.edu

Hello,

I am trying to mesh a nerve using Biomesh 3D. It was terminating abruptly at stage 6. 

i am attaching the 'model_config' code  and the error below. 
Please guide me.

Thank you so much
Regards
Purbasha




model_input_file="M:\FEM of Sciatic Nerve\New folder\SN_segmentation.nrrd"
# this directory must exist....
model_output_path="output"
# -1 means all the rest of the materials combined
mats = (0, 1, 2, 3, 4, 5, 6, 7, 8, 9)
mat_names = ('background', 'saline', 'electrode',
'External_Epineurium','Internal_Epineurium','perineurium','tibial','peroneal','sural','sciaitc_nerve_without_branching')

mat_radii = 0

#Number of refinment levels when generating the medial axis points.
#More levels are needed to capture smaller details.
refinement_levels=2

# Cap number of processes
max_procs=2

MAX_SIZING_FIELD = 5.0
SIZING_SCALE_VAR = 2.0
CONSTAN_SIZING_FIELD = 5

# tetgen flags to use when making a volume from all the materials
# combined
tetgen_joined_vol_flags = "zpAAqa10"
num_particle_iters = 100

Attachment: ptcl.field_.JPG
Description: JPEG image

Attachment: stopped_working_partical_parameter_2.JPG
Description: JPEG image


Archive powered by MHonArc 2.6.18.

Top of page