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Re: [SCIRUN-USERS] Biomesh 3D question


Chronological Thread 
  • From: Brett Burton <bburton@sci.utah.edu>
  • To: Petar Petrov <pip010@gmail.com>
  • Cc: Elizabeth Jurrus <liz@sci.utah.edu>, "scirun-users@sci.utah.edu" <scirun-users@sci.utah.edu>, Purbasha Garai <pg0222@gmail.com>
  • Subject: Re: [SCIRUN-USERS] Biomesh 3D question
  • Date: Mon, 24 Nov 2014 12:13:04 -0700
I have also not seen this call. I thought someone had perhaps added it.

The way that we apply a constant sizing field is to open up the sf file in SCIRun, connect it to a CalculateSizingField module and define the sf (DATA = "2)."  Then we save it over the original sizing field file and continue running Biomesh after the sizing field (add the -s5:8 flag in the Biomesh call).  I can provide a network and a step-by-step walk thru if needed.


On Nov 24, 2014, at 11:49 AM, Petar Petrov <pip010@gmail.com> wrote:

Hi Brett,
do you mean:
CONSTAN_SIZING_FIELD

because, this one I haven't seen anywhere. not in any sample model_config.py nor in the code for the particle optimization (step 6).

Cheers,
Petar

On Thu, Nov 20, 2014 at 6:56 PM, Brett Burton <bburton@sci.utah.edu> wrote:
Is the constant sizing field parameter supposed to be misspelled?


On Nov 19, 2014, at 7:05 AM, Petar Petrov <pip010@gmail.com> wrote:

From your model_config.py
MAX_SIZING_FIELD = 5.0
SIZING_SCALE_VAR = 2.0
CONSTAN_SIZING_FIELD = 5

AFAIK only MAX_SIZING_FIELD is used!

try changing it like lower and also matt_radii to 0.1 or 0.01 but not 0

i experience crashes with some combination of the two params but not with other.
using the same model!

On Tue, Nov 18, 2014 at 8:32 PM, Elizabeth Jurrus <liz@sci.utah.edu> wrote:
Forwarding to scirun-users.
- liz


-------- Forwarded Message --------
Subject: Message distribution: Authorization denied
Date: Tue, 18 Nov 2014 14:02:02 -0500
From: Purbasha Garai <pg0222@gmail.com>
To: scirun-users-request@sci.utah.edu


Hello,

I am trying to mesh a nerve using Biomesh 3D. It was terminating abruptly at stage 6. 

i am attaching the 'model_config' code  and the error below. 
Please guide me.

Thank you so much
Regards
Purbasha







--
All the best,
Petar Petrov
http://ppetrov.net




--
All the best,
Petar Petrov
http://ppetrov.net


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