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Re: [SCIRUN-USERS] A question about SciRun/BioPSE and Magnetocardiography

Chronological Thread 
  • From: Jess Tate <>
  • Cc:,
  • Subject: Re: [SCIRUN-USERS] A question about SciRun/BioPSE and Magnetocardiography
  • Date: Wed, 24 Feb 2016 15:31:43 -0700

Hi Laith,

We have a couple modules, InterfaceWithNeuroFEMForward/Inverse, in SCIRun 4.7 that will probably do what you need.  This module allows one to call neuroFEM and pass some geometries and parameters to it.  I think that you need to have neuroFEM installed separately and then you point to the installation in the module ui.  I haven't used these modules, but there is an example network distributed with SCIRun in example_nets/BioPSE/Optional/ForwardIPM.srn.  You should make sure that you have the SCIRunData directory downloaded and set in your configurations options (Configure button on the lower right corner) and set the set the data set parameter to 'sphere' or 'brain-eg'.  There is also an example of magnetic stimulation in the user documentation tab on the website.


On Feb 24, 2016, at 11:38 AM, Elizabeth Jurrus <> wrote:

Hi Laith,

Just forwarding your question onto our expert users for advice.

- liz

-------- Forwarded Message --------
Subject: A question about SciRun/BioPSE and Magnetocardiography
Date: Wed, 24 Feb 2016 18:47:16 +0100
From: Laith Hamid <>
Organization: AG PedBI/Institut für Medizinische Psychologie und Medizinische Soziologie

Dear Elizabeth,

I am a doctoral student at the university medical complex of Schleswig-Holstein in Kiel, Germany. My task is to solve the forward and inverse problems of magnetocardiography and I have found out that SciRun could be suitable for that task. In SciRun/BioPSE I found example networks for BEM and FEM for electrocardiography. I wanted to ask if it will be possible to place dipoles in the heart and simulate the resulting magnetic field using NeuroFEM within SciRun/BioPSE. Which version of SciRun should I use for that (I am currently using v4.7)?

Thank you very much and best wishes,

Laith Hamid


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