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Re: [SCIRUN-USERS] Isotropy-Greensite regularization method network


Chronological Thread 
  • From: Jess <jess@sci.utah.edu>
  • To: Mattia Gentile <mattia.gentile@outlook.com>
  • Cc: "scirun-users@sci.utah.edu" <scirun-users@sci.utah.edu>
  • Subject: Re: [SCIRUN-USERS] Isotropy-Greensite regularization method network
  • Date: Mon, 29 Oct 2018 12:17:43 -0600
Hi Mattia,

The Isotropy-greensite implementation in SCIRun 4 is a Matlab implementation.  To run this code, you can use the InterfaceWithMatlab.  There are some instructions in the toolkit documentation on the website (http://www.sci.utah.edu/devbuilds/scirun_docs/ECGToolkitGuide.pdf) on page 32. 

Alternatively, there is an example in SCIRun 5 that does not require Matlab.  This example could also be recreated in SCIRun 4.  The toolkit for SCIRun 5 is available at: https://github.com/SCIInstitute/FwdInvToolkit. The network file is called greensite-inverse-IsotropyMethod.srn5 (https://github.com/SCIInstitute/FwdInvToolkit/blob/master/Networks/potential-based-inverse/greensite-inverse-IsotropyMethod.srn5).

cheers,
Jess




On Oct 27, 2018, at 10:24 AM, Mattia Gentile <mattia.gentile@outlook.com> wrote:

Hi,
 
Mattia again. With your help in the past I’ve made much progress, and couldn’t thank you enough. Right now I’m trying to add a network computing the Isotropy-Greensite regularization but I can’t find much.

I’ve used the search function in my OS and found only a isotropy.hpp file that I don’t know how to use, a greensite.m file that is just some commented introduction lines (the ones available in the SCIRun Visualization Basics pdf), and that’s it.
 
I’m using SCIRun 4.7.
 
Is there a way to have a running network of even a MatlabInterface module with the correct script to add to my collection of working simulations?

Thanks in advance
 
Mattia Gentile
 

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