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Re: [SCIRUN-USERS] TriSurfField


Chronological Thread 
  • From: "Branham, Barry" <bhb@wustl.edu>
  • To: Jess <jess@sci.utah.edu>
  • Cc: "scirun-users@sci.utah.edu" <scirun-users@sci.utah.edu>
  • Subject: Re: [SCIRUN-USERS] TriSurfField
  • Date: Mon, 22 Apr 2019 13:30:48 +0000
  • Accept-language: en-US
  • Authentication-results: spf=none (sender IP is ) smtp.mailfrom=bhb@wustl.edu;

Hi Jess,


Thanks for the rapid reply.  The Amira file has '.surf' extension and is ascii.  I tried loading it but got 'Error reading file'.  I've attached it. I have code to read the file and have tried writing an app that would read it and convert it to an .fld type file but so far haven't been able to get an .fld file with the correct info at the top similiar to '25feb97_sock_closed.fld '.  That was what I was originally asking about.  Some where, someone must have used some app to create '25feb97_sock_closed.fld'.  That's what I need.  Any help doing that much appreciated.


Thanks,

Barry


Barry Branham, Computer Operations Engineer
Cardiothoracic Surgery Research
Washington University School of Medicine
bhb@wustl.edu  636-236-4847
From: Jess <jess@sci.utah.edu>
Sent: Friday, April 19, 2019 1:41:28 PM
To: Branham, Barry
Cc: scirun-users@sci.utah.edu
Subject: Re: [SCIRUN-USERS] TriSurfField
 
Hi Barry,  

There are several file formats supported by SCIRun. If you click on the options in the ReadField file loader dialogue, you should see a list.  Common file types for trisurfas that SCIRun supports are .stl, .vtk, .obj, and ascii.    Can you tell me the file type that you have from Amira?

cheers,
Jess




On Apr 19, 2019, at 8:27 AM, Branham, Barry <bhb@wustl.edu> wrote:

Hello, 

I'm attempting to use inversion to find atrial activation times from torso electrodes.  We use Amira to generate torso locations and the atrial surface.  I can read the Amira atrial surface file but haven't been able to generate the corresponding TriSurfField .fld file correctly.  I need a file like 25feb97_sock_closed.fld which is used in the tikhonov-inversion.srn example.  Can anyone tell me how to do this?  A code example would be great. 

Thanks, 
Barry



Barry Branham, Computer Operations Engineer
Cardiothoracic Surgery Research
Washington University School of Medicine
bhb@wustl.edu  636-236-4847

 
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Attachment: atriasmooth.surf
Description: atriasmooth.surf


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