Text archives Help

---

Hi all,

I recently compiled Seg3D 2.1.2 on my Ubuntu machine. When I try to
start Seg3D, sometimes it works, but more often than not, it dies
giving segmentation fault. The segmentation fault usually occurs when
I try to open an existing project or do a quick open file. For
example, below is the last section of debug messages I got when I
tried to do a quick open file and Seg3D segfaulted. Anyone else has
this problem? Any ideas what might be wrong?

Thanks much,
Fijoy


[2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
toolinterface : croptool
[2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
toolinterface : painttool
[2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
toolinterface : polylinetool
[2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
toolinterface : inverttool
[2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
toolinterface : resampletool
[2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
toolinterface : thresholdtool
[2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
toolinterface : arithmeticfilter
[2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
toolinterface : binarydilateerodefilter
[2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
toolinterface : binarysmoothdilateerodefilter
[2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
toolinterface : cannyedgedetectionfilter
[2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
toolinterface : confidenceconnectedfilter
[2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
toolinterface : connectedcomponentfilter
[2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
toolinterface : connectedcomponentsizefilter
[2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
toolinterface : curvatureanisotropicdiffusionfilter
[2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
toolinterface : discretegaussianfilter
[2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
toolinterface : distancefilter
[2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
toolinterface : fillholesfilter
[2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
toolinterface : gradientanisotropicdiffusionfilter
[2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
toolinterface : gradientmagnitudefilter
[2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
toolinterface : histogramequalizationfilter
[2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
toolinterface : intensitycorrectionfilter
[2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
toolinterface : maskdatafilter
[2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
toolinterface : medianfilter
[2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
toolinterface : meanfilter
[2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
toolinterface : neighborhoodconnectedfilter
[2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
toolinterface : otsuthresholdfilter
[2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
toolinterface : andfilter
[2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
toolinterface : removefilter
[2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
toolinterface : orfilter
[2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
toolinterface : xorfilter
[2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
toolinterface : thresholdsegmentationlsfilter
[2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
toolinterface : fliptool
[2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
toolinterface : transformtool
[2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
toolinterface : clipboardtool
[2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
toolinterface : measurementtool
[2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
toolinterface : pointsetfilter
[2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
toolinterface : speedlinetool
[2011-Dec-12 12:15:37|0.04|QtApplication.cc|88] DEBUG: Setup QT Application
[2011-Dec-12 12:15:37|0.04|QtApplication.cc|98] DEBUG: Creating QApplication
[2011-Dec-12 12:15:37|0.37|QtApplication.cc|105] DEBUG: Creating
QtEventHandlerContext
[2011-Dec-12 12:15:37|0.37|QtApplication.cc|110] DEBUG: Install the
QtEventHandlerContext into the Interface layer
[2011-Dec-12 12:15:37|0.37|QtApplication.cc|115] DEBUG: Creating
QtRenderResourcesContext
[2011-Dec-12 12:15:37|0.4|QtApplication.cc|118] DEBUG: Install the
QtRenderResources into the Interface layer
[2011-Dec-12 12:15:37|0.49|RenderResources.cc|201] WARNING: Failed to
query video memory size.
[2011-Dec-12 12:15:37|0.49|RenderResources.cc|202] WARNING: Assuming
system has at least 128 MB of graphics memory.
[2011-Dec-12 12:15:37|0.5|PythonInterpreter.cc|315] DEBUG:
Initializing Python ...
[2011-Dec-12 12:15:37|0.74|PythonInterpreter.cc|323] DEBUG: Python 
initialized.
[2011-Dec-12 12:15:37|0.74|StateEngine.cc|350] MESSAGE: State handler
registered with ID view
[2011-Dec-12 12:15:37|0.74|StateEngine.cc|350] MESSAGE: State handler
registered with ID tf_0
[2011-Dec-12 12:15:37|0.74|StateEngine.cc|350] MESSAGE: State handler
registered with ID preferences
[2011-Dec-12 12:15:37|0.75|StateEngine.cc|350] MESSAGE: State handler
registered with ID layermanager
[2011-Dec-12 12:15:37|0.75|StateEngine.cc|350] MESSAGE: State handler
registered with ID viewer0
[2011-Dec-12 12:15:37|0.75|StateEngine.cc|350] MESSAGE: State handler
registered with ID viewer1
[2011-Dec-12 12:15:37|0.76|StateEngine.cc|350] MESSAGE: State handler
registered with ID viewer2
[2011-Dec-12 12:15:37|0.77|StateEngine.cc|350] MESSAGE: State handler
registered with ID viewer3
[2011-Dec-12 12:15:37|0.77|StateEngine.cc|350] MESSAGE: State handler
registered with ID viewer4
[2011-Dec-12 12:15:37|0.77|StateEngine.cc|350] MESSAGE: State handler
registered with ID viewer5
[2011-Dec-12 12:15:37|0.78|RendererBase.cc|369] DEBUG: Initializing
renderer in the interface thread
[2011-Dec-12 12:15:38|0.99|VolumeRendererOcclusion.cc|186] WARNING:
VolumeRendererOcclusion is disabled because GL_EXT_draw_buffers2 is
not found.
[2011-Dec-12 12:15:38|1.03|QtRenderResources.cc|152] DEBUG: Create an
OpenGL widget
[2011-Dec-12 12:15:38|1.05|RendererBase.cc|369] DEBUG: Initializing
renderer in the interface thread
[2011-Dec-12 12:15:38|1.19|VolumeRendererOcclusion.cc|186] WARNING:
VolumeRendererOcclusion is disabled because GL_EXT_draw_buffers2 is
not found.
[2011-Dec-12 12:15:38|1.22|QtRenderResources.cc|152] DEBUG: Create an
OpenGL widget
[2011-Dec-12 12:15:38|1.23|RendererBase.cc|369] DEBUG: Initializing
renderer in the interface thread
[2011-Dec-12 12:15:38|1.37|VolumeRendererOcclusion.cc|186] WARNING:
VolumeRendererOcclusion is disabled because GL_EXT_draw_buffers2 is
not found.
[2011-Dec-12 12:15:38|1.39|QtRenderResources.cc|152] DEBUG: Create an
OpenGL widget
[2011-Dec-12 12:15:38|1.4|RendererBase.cc|369] DEBUG: Initializing
renderer in the interface thread
[2011-Dec-12 12:15:38|1.55|VolumeRendererOcclusion.cc|186] WARNING:
VolumeRendererOcclusion is disabled because GL_EXT_draw_buffers2 is
not found.
[2011-Dec-12 12:15:38|1.58|QtRenderResources.cc|152] DEBUG: Create an
OpenGL widget
[2011-Dec-12 12:15:38|1.59|RendererBase.cc|369] DEBUG: Initializing
renderer in the interface thread
[2011-Dec-12 12:15:38|1.73|VolumeRendererOcclusion.cc|186] WARNING:
VolumeRendererOcclusion is disabled because GL_EXT_draw_buffers2 is
not found.
[2011-Dec-12 12:15:38|1.75|QtRenderResources.cc|152] DEBUG: Create an
OpenGL widget
[2011-Dec-12 12:15:38|1.77|RendererBase.cc|369] DEBUG: Initializing
renderer in the interface thread
[2011-Dec-12 12:15:39|1.92|VolumeRendererOcclusion.cc|186] WARNING:
VolumeRendererOcclusion is disabled because GL_EXT_draw_buffers2 is
not found.
[2011-Dec-12 12:15:39|1.95|QtRenderResources.cc|152] DEBUG: Create an
OpenGL widget
[2011-Dec-12 12:15:39|2.13|StateEngine.cc|350] MESSAGE: State handler
registered with ID interface
[2011-Dec-12 12:15:39|2.13|StateEngine.cc|350] MESSAGE: State handler
registered with ID projectmanager
[2011-Dec-12 12:15:39|2.13|StateEngine.cc|350] MESSAGE: State handler
registered with ID project_0
[2011-Dec-12 12:15:39|2.16|StateEngine.cc|350] MESSAGE: State handler
registered with ID toolmanager
[2011-Dec-12 12:15:39|2.16|StateEngine.cc|350] MESSAGE: State handler
registered with ID statusbar
[2011-Dec-12 12:15:40|2.9|Renderer.cc|704] DEBUG: Renderer 5: starting redraw
[2011-Dec-12 12:15:40|2.9|Renderer.cc|981] DEBUG: Renderer 5: done redraw
[2011-Dec-12 12:15:40|2.91|Renderer.cc|997] DEBUG: Renderer 5:
starting redraw overlay
[2011-Dec-12 12:15:40|2.91|Renderer.cc|1245] DEBUG: Renderer 5: done
redraw overlay
[2011-Dec-12 12:15:40|2.93|Renderer.cc|704] DEBUG: Renderer 4: starting redraw
[2011-Dec-12 12:15:40|2.93|Renderer.cc|981] DEBUG: Renderer 4: done redraw
[2011-Dec-12 12:15:40|2.93|Renderer.cc|997] DEBUG: Renderer 4:
starting redraw overlay
[2011-Dec-12 12:15:40|2.93|Renderer.cc|1245] DEBUG: Renderer 4: done
redraw overlay
[2011-Dec-12 12:15:40|2.95|Renderer.cc|704] DEBUG: Renderer 3: starting redraw
[2011-Dec-12 12:15:40|2.95|Renderer.cc|981] DEBUG: Renderer 3: done redraw
[2011-Dec-12 12:15:40|2.95|Renderer.cc|997] DEBUG: Renderer 3:
starting redraw overlay
[2011-Dec-12 12:15:40|2.95|Renderer.cc|1245] DEBUG: Renderer 3: done
redraw overlay
[2011-Dec-12 12:15:40|2.97|Renderer.cc|704] DEBUG: Renderer 0: starting redraw
[2011-Dec-12 12:15:40|2.97|Renderer.cc|981] DEBUG: Renderer 0: done redraw
[2011-Dec-12 12:15:40|2.97|Renderer.cc|997] DEBUG: Renderer 0:
starting redraw overlay
[2011-Dec-12 12:15:40|2.98|Renderer.cc|1245] DEBUG: Renderer 0: done
redraw overlay
[2011-Dec-12 12:15:40|3|QtApplication.cc|138] DEBUG: Starting main QT event 
loop
[2011-Dec-12 12:15:40|3.01|Renderer.cc|704] DEBUG: Renderer 3: starting redraw
[2011-Dec-12 12:15:40|3.01|Renderer.cc|981] DEBUG: Renderer 3: done redraw
[2011-Dec-12 12:15:40|3.02|Renderer.cc|997] DEBUG: Renderer 3:
starting redraw overlay
[2011-Dec-12 12:15:40|3.02|Renderer.cc|1245] DEBUG: Renderer 3: done
redraw overlay
[2011-Dec-12 12:15:40|3.03|Renderer.cc|704] DEBUG: Renderer 4: starting redraw
[2011-Dec-12 12:15:40|3.03|Renderer.cc|981] DEBUG: Renderer 4: done redraw
[2011-Dec-12 12:15:40|3.03|Renderer.cc|997] DEBUG: Renderer 4:
starting redraw overlay
[2011-Dec-12 12:15:40|3.03|Renderer.cc|1245] DEBUG: Renderer 4: done
redraw overlay
[2011-Dec-12 12:15:40|3.04|Renderer.cc|704] DEBUG: Renderer 5: starting redraw
[2011-Dec-12 12:15:40|3.04|Renderer.cc|981] DEBUG: Renderer 5: done redraw
[2011-Dec-12 12:15:40|3.04|Renderer.cc|997] DEBUG: Renderer 5:
starting redraw overlay
[2011-Dec-12 12:15:40|3.04|Renderer.cc|1245] DEBUG: Renderer 5: done
redraw overlay
[2011-Dec-12 12:15:42|3.53|ActionDispatcher.cc|102] DEBUG: Posting
Action: NewProject path='[]' name='[New Project 9]'
[2011-Dec-12 12:15:42|3.53|StateEngine.cc|350] MESSAGE: State handler
registered with ID project_1
[2011-Dec-12 12:15:42|3.56|ActionNewProject.cc|145] SUCCESS:
Successfully created new project 'New Project 9'.
[2011-Dec-12 12:15:42|3.77|ApplicationInterface.cc|480] DEBUG: --
Disabling the menubar --
[2011-Dec-12 12:15:42|3.77|ApplicationInterface.cc|484] DEBUG: --
Picturizing the Viewer Interface --
[2011-Dec-12 12:15:42|3.79|ApplicationInterface.cc|488] DEBUG: --
Putting overlays over all the floating dock widgets --
[2011-Dec-12 12:15:42|3.79|ApplicationInterface.cc|496] DEBUG: --
Start progress widget --
[2011-Dec-12 12:15:42|3.79|Timer.cc|59] DEBUG: Timer started
[2011-Dec-12 12:15:42|3.79|Renderer.cc|704] DEBUG: Renderer 0: starting redraw
[2011-Dec-12 12:15:42|3.79|Renderer.cc|981] DEBUG: Renderer 0: done redraw
[2011-Dec-12 12:15:42|3.79|Renderer.cc|997] DEBUG: Renderer 0:
starting redraw overlay
[2011-Dec-12 12:15:42|3.79|Renderer.cc|1245] DEBUG: Renderer 0: done
redraw overlay
[2011-Dec-12 12:15:42|3.8|Renderer.cc|704] DEBUG: Renderer 3: starting redraw
[2011-Dec-12 12:15:42|3.8|Renderer.cc|981] DEBUG: Renderer 3: done redraw
[2011-Dec-12 12:15:42|3.8|Renderer.cc|997] DEBUG: Renderer 3: starting
redraw overlay
[2011-Dec-12 12:15:42|3.8|Renderer.cc|1245] DEBUG: Renderer 3: done
redraw overlay
[2011-Dec-12 12:15:42|3.8|Renderer.cc|704] DEBUG: Renderer 4: starting redraw
[2011-Dec-12 12:15:42|3.8|Renderer.cc|981] DEBUG: Renderer 4: done redraw
[2011-Dec-12 12:15:42|3.8|Renderer.cc|997] DEBUG: Renderer 4: starting
redraw overlay
[2011-Dec-12 12:15:42|3.8|Renderer.cc|1245] DEBUG: Renderer 4: done
redraw overlay
[2011-Dec-12 12:15:42|3.81|Renderer.cc|704] DEBUG: Renderer 5: starting redraw
[2011-Dec-12 12:15:42|3.81|Renderer.cc|981] DEBUG: Renderer 5: done redraw
[2011-Dec-12 12:15:42|3.81|Renderer.cc|997] DEBUG: Renderer 5:
starting redraw overlay
[2011-Dec-12 12:15:42|3.81|Renderer.cc|1245] DEBUG: Renderer 5: done
redraw overlay
[2011-Dec-12 12:15:42|3.81|ApplicationInterface.cc|508] DEBUG: --
Removing overlays from all the floating dock widgets --
[2011-Dec-12 12:15:42|3.81|ApplicationInterface.cc|516] DEBUG: --
Unpicturizing the Viewer Interface --
[2011-Dec-12 12:15:42|3.82|ApplicationInterface.cc|519] DEBUG: --
Enabling the menubar --
[2011-Dec-12 12:15:42|3.82|ApplicationInterface.cc|522] DEBUG: --
Finish progress widget --
[2011-Dec-12 12:15:42|3.82|Timer.cc|75] DEBUG: Timer stopped
Segmentation fault

---

• [Seg3D] Seg3D 2.1.2 Segmentation Fault, Fijoy Vadakkumpadan, 12/12/2011
  • [Seg3D] Re: Seg3D 2.1.2 Segmentation Fault, Ayla Khan, 12/12/2011

---

Archive powered by MHonArc 2.6.16.