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Hi Fijoy,

We have an open bug for the Ubuntu crash using quick open file from the 
project manager. Can you send a log file for a crash wen opening an existing 
project? You will find log files under .Seg3D in your home directory.

Thanks,

Ayla

On Dec 12, 2011, at 10:26 AM, Fijoy Vadakkumpadan wrote:

> Hi all,
> 
> I recently compiled Seg3D 2.1.2 on my Ubuntu machine. When I try to
> start Seg3D, sometimes it works, but more often than not, it dies
> giving segmentation fault. The segmentation fault usually occurs when
> I try to open an existing project or do a quick open file. For
> example, below is the last section of debug messages I got when I
> tried to do a quick open file and Seg3D segfaulted. Anyone else has
> this problem? Any ideas what might be wrong?
> 
> Thanks much,
> Fijoy
> 
> 
> [2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
> toolinterface : croptool
> [2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
> toolinterface : painttool
> [2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
> toolinterface : polylinetool
> [2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
> toolinterface : inverttool
> [2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
> toolinterface : resampletool
> [2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
> toolinterface : thresholdtool
> [2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
> toolinterface : arithmeticfilter
> [2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
> toolinterface : binarydilateerodefilter
> [2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
> toolinterface : binarysmoothdilateerodefilter
> [2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
> toolinterface : cannyedgedetectionfilter
> [2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
> toolinterface : confidenceconnectedfilter
> [2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
> toolinterface : connectedcomponentfilter
> [2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
> toolinterface : connectedcomponentsizefilter
> [2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
> toolinterface : curvatureanisotropicdiffusionfilter
> [2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
> toolinterface : discretegaussianfilter
> [2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
> toolinterface : distancefilter
> [2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
> toolinterface : fillholesfilter
> [2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
> toolinterface : gradientanisotropicdiffusionfilter
> [2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
> toolinterface : gradientmagnitudefilter
> [2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
> toolinterface : histogramequalizationfilter
> [2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
> toolinterface : intensitycorrectionfilter
> [2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
> toolinterface : maskdatafilter
> [2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
> toolinterface : medianfilter
> [2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
> toolinterface : meanfilter
> [2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
> toolinterface : neighborhoodconnectedfilter
> [2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
> toolinterface : otsuthresholdfilter
> [2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
> toolinterface : andfilter
> [2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
> toolinterface : removefilter
> [2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
> toolinterface : orfilter
> [2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
> toolinterface : xorfilter
> [2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
> toolinterface : thresholdsegmentationlsfilter
> [2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
> toolinterface : fliptool
> [2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
> toolinterface : transformtool
> [2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
> toolinterface : clipboardtool
> [2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
> toolinterface : measurementtool
> [2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
> toolinterface : pointsetfilter
> [2011-Dec-12 12:15:37|0.04|ToolFactory.cc|158] DEBUG: Registering
> toolinterface : speedlinetool
> [2011-Dec-12 12:15:37|0.04|QtApplication.cc|88] DEBUG: Setup QT Application
> [2011-Dec-12 12:15:37|0.04|QtApplication.cc|98] DEBUG: Creating QApplication
> [2011-Dec-12 12:15:37|0.37|QtApplication.cc|105] DEBUG: Creating
> QtEventHandlerContext
> [2011-Dec-12 12:15:37|0.37|QtApplication.cc|110] DEBUG: Install the
> QtEventHandlerContext into the Interface layer
> [2011-Dec-12 12:15:37|0.37|QtApplication.cc|115] DEBUG: Creating
> QtRenderResourcesContext
> [2011-Dec-12 12:15:37|0.4|QtApplication.cc|118] DEBUG: Install the
> QtRenderResources into the Interface layer
> [2011-Dec-12 12:15:37|0.49|RenderResources.cc|201] WARNING: Failed to
> query video memory size.
> [2011-Dec-12 12:15:37|0.49|RenderResources.cc|202] WARNING: Assuming
> system has at least 128 MB of graphics memory.
> [2011-Dec-12 12:15:37|0.5|PythonInterpreter.cc|315] DEBUG:
> Initializing Python ...
> [2011-Dec-12 12:15:37|0.74|PythonInterpreter.cc|323] DEBUG: Python 
> initialized.
> [2011-Dec-12 12:15:37|0.74|StateEngine.cc|350] MESSAGE: State handler
> registered with ID view
> [2011-Dec-12 12:15:37|0.74|StateEngine.cc|350] MESSAGE: State handler
> registered with ID tf_0
> [2011-Dec-12 12:15:37|0.74|StateEngine.cc|350] MESSAGE: State handler
> registered with ID preferences
> [2011-Dec-12 12:15:37|0.75|StateEngine.cc|350] MESSAGE: State handler
> registered with ID layermanager
> [2011-Dec-12 12:15:37|0.75|StateEngine.cc|350] MESSAGE: State handler
> registered with ID viewer0
> [2011-Dec-12 12:15:37|0.75|StateEngine.cc|350] MESSAGE: State handler
> registered with ID viewer1
> [2011-Dec-12 12:15:37|0.76|StateEngine.cc|350] MESSAGE: State handler
> registered with ID viewer2
> [2011-Dec-12 12:15:37|0.77|StateEngine.cc|350] MESSAGE: State handler
> registered with ID viewer3
> [2011-Dec-12 12:15:37|0.77|StateEngine.cc|350] MESSAGE: State handler
> registered with ID viewer4
> [2011-Dec-12 12:15:37|0.77|StateEngine.cc|350] MESSAGE: State handler
> registered with ID viewer5
> [2011-Dec-12 12:15:37|0.78|RendererBase.cc|369] DEBUG: Initializing
> renderer in the interface thread
> [2011-Dec-12 12:15:38|0.99|VolumeRendererOcclusion.cc|186] WARNING:
> VolumeRendererOcclusion is disabled because GL_EXT_draw_buffers2 is
> not found.
> [2011-Dec-12 12:15:38|1.03|QtRenderResources.cc|152] DEBUG: Create an
> OpenGL widget
> [2011-Dec-12 12:15:38|1.05|RendererBase.cc|369] DEBUG: Initializing
> renderer in the interface thread
> [2011-Dec-12 12:15:38|1.19|VolumeRendererOcclusion.cc|186] WARNING:
> VolumeRendererOcclusion is disabled because GL_EXT_draw_buffers2 is
> not found.
> [2011-Dec-12 12:15:38|1.22|QtRenderResources.cc|152] DEBUG: Create an
> OpenGL widget
> [2011-Dec-12 12:15:38|1.23|RendererBase.cc|369] DEBUG: Initializing
> renderer in the interface thread
> [2011-Dec-12 12:15:38|1.37|VolumeRendererOcclusion.cc|186] WARNING:
> VolumeRendererOcclusion is disabled because GL_EXT_draw_buffers2 is
> not found.
> [2011-Dec-12 12:15:38|1.39|QtRenderResources.cc|152] DEBUG: Create an
> OpenGL widget
> [2011-Dec-12 12:15:38|1.4|RendererBase.cc|369] DEBUG: Initializing
> renderer in the interface thread
> [2011-Dec-12 12:15:38|1.55|VolumeRendererOcclusion.cc|186] WARNING:
> VolumeRendererOcclusion is disabled because GL_EXT_draw_buffers2 is
> not found.
> [2011-Dec-12 12:15:38|1.58|QtRenderResources.cc|152] DEBUG: Create an
> OpenGL widget
> [2011-Dec-12 12:15:38|1.59|RendererBase.cc|369] DEBUG: Initializing
> renderer in the interface thread
> [2011-Dec-12 12:15:38|1.73|VolumeRendererOcclusion.cc|186] WARNING:
> VolumeRendererOcclusion is disabled because GL_EXT_draw_buffers2 is
> not found.
> [2011-Dec-12 12:15:38|1.75|QtRenderResources.cc|152] DEBUG: Create an
> OpenGL widget
> [2011-Dec-12 12:15:38|1.77|RendererBase.cc|369] DEBUG: Initializing
> renderer in the interface thread
> [2011-Dec-12 12:15:39|1.92|VolumeRendererOcclusion.cc|186] WARNING:
> VolumeRendererOcclusion is disabled because GL_EXT_draw_buffers2 is
> not found.
> [2011-Dec-12 12:15:39|1.95|QtRenderResources.cc|152] DEBUG: Create an
> OpenGL widget
> [2011-Dec-12 12:15:39|2.13|StateEngine.cc|350] MESSAGE: State handler
> registered with ID interface
> [2011-Dec-12 12:15:39|2.13|StateEngine.cc|350] MESSAGE: State handler
> registered with ID projectmanager
> [2011-Dec-12 12:15:39|2.13|StateEngine.cc|350] MESSAGE: State handler
> registered with ID project_0
> [2011-Dec-12 12:15:39|2.16|StateEngine.cc|350] MESSAGE: State handler
> registered with ID toolmanager
> [2011-Dec-12 12:15:39|2.16|StateEngine.cc|350] MESSAGE: State handler
> registered with ID statusbar
> [2011-Dec-12 12:15:40|2.9|Renderer.cc|704] DEBUG: Renderer 5: starting 
> redraw
> [2011-Dec-12 12:15:40|2.9|Renderer.cc|981] DEBUG: Renderer 5: done redraw
> [2011-Dec-12 12:15:40|2.91|Renderer.cc|997] DEBUG: Renderer 5:
> starting redraw overlay
> [2011-Dec-12 12:15:40|2.91|Renderer.cc|1245] DEBUG: Renderer 5: done
> redraw overlay
> [2011-Dec-12 12:15:40|2.93|Renderer.cc|704] DEBUG: Renderer 4: starting 
> redraw
> [2011-Dec-12 12:15:40|2.93|Renderer.cc|981] DEBUG: Renderer 4: done redraw
> [2011-Dec-12 12:15:40|2.93|Renderer.cc|997] DEBUG: Renderer 4:
> starting redraw overlay
> [2011-Dec-12 12:15:40|2.93|Renderer.cc|1245] DEBUG: Renderer 4: done
> redraw overlay
> [2011-Dec-12 12:15:40|2.95|Renderer.cc|704] DEBUG: Renderer 3: starting 
> redraw
> [2011-Dec-12 12:15:40|2.95|Renderer.cc|981] DEBUG: Renderer 3: done redraw
> [2011-Dec-12 12:15:40|2.95|Renderer.cc|997] DEBUG: Renderer 3:
> starting redraw overlay
> [2011-Dec-12 12:15:40|2.95|Renderer.cc|1245] DEBUG: Renderer 3: done
> redraw overlay
> [2011-Dec-12 12:15:40|2.97|Renderer.cc|704] DEBUG: Renderer 0: starting 
> redraw
> [2011-Dec-12 12:15:40|2.97|Renderer.cc|981] DEBUG: Renderer 0: done redraw
> [2011-Dec-12 12:15:40|2.97|Renderer.cc|997] DEBUG: Renderer 0:
> starting redraw overlay
> [2011-Dec-12 12:15:40|2.98|Renderer.cc|1245] DEBUG: Renderer 0: done
> redraw overlay
> [2011-Dec-12 12:15:40|3|QtApplication.cc|138] DEBUG: Starting main QT event 
> loop
> [2011-Dec-12 12:15:40|3.01|Renderer.cc|704] DEBUG: Renderer 3: starting 
> redraw
> [2011-Dec-12 12:15:40|3.01|Renderer.cc|981] DEBUG: Renderer 3: done redraw
> [2011-Dec-12 12:15:40|3.02|Renderer.cc|997] DEBUG: Renderer 3:
> starting redraw overlay
> [2011-Dec-12 12:15:40|3.02|Renderer.cc|1245] DEBUG: Renderer 3: done
> redraw overlay
> [2011-Dec-12 12:15:40|3.03|Renderer.cc|704] DEBUG: Renderer 4: starting 
> redraw
> [2011-Dec-12 12:15:40|3.03|Renderer.cc|981] DEBUG: Renderer 4: done redraw
> [2011-Dec-12 12:15:40|3.03|Renderer.cc|997] DEBUG: Renderer 4:
> starting redraw overlay
> [2011-Dec-12 12:15:40|3.03|Renderer.cc|1245] DEBUG: Renderer 4: done
> redraw overlay
> [2011-Dec-12 12:15:40|3.04|Renderer.cc|704] DEBUG: Renderer 5: starting 
> redraw
> [2011-Dec-12 12:15:40|3.04|Renderer.cc|981] DEBUG: Renderer 5: done redraw
> [2011-Dec-12 12:15:40|3.04|Renderer.cc|997] DEBUG: Renderer 5:
> starting redraw overlay
> [2011-Dec-12 12:15:40|3.04|Renderer.cc|1245] DEBUG: Renderer 5: done
> redraw overlay
> [2011-Dec-12 12:15:42|3.53|ActionDispatcher.cc|102] DEBUG: Posting
> Action: NewProject path='[]' name='[New Project 9]'
> [2011-Dec-12 12:15:42|3.53|StateEngine.cc|350] MESSAGE: State handler
> registered with ID project_1
> [2011-Dec-12 12:15:42|3.56|ActionNewProject.cc|145] SUCCESS:
> Successfully created new project 'New Project 9'.
> [2011-Dec-12 12:15:42|3.77|ApplicationInterface.cc|480] DEBUG: --
> Disabling the menubar --
> [2011-Dec-12 12:15:42|3.77|ApplicationInterface.cc|484] DEBUG: --
> Picturizing the Viewer Interface --
> [2011-Dec-12 12:15:42|3.79|ApplicationInterface.cc|488] DEBUG: --
> Putting overlays over all the floating dock widgets --
> [2011-Dec-12 12:15:42|3.79|ApplicationInterface.cc|496] DEBUG: --
> Start progress widget --
> [2011-Dec-12 12:15:42|3.79|Timer.cc|59] DEBUG: Timer started
> [2011-Dec-12 12:15:42|3.79|Renderer.cc|704] DEBUG: Renderer 0: starting 
> redraw
> [2011-Dec-12 12:15:42|3.79|Renderer.cc|981] DEBUG: Renderer 0: done redraw
> [2011-Dec-12 12:15:42|3.79|Renderer.cc|997] DEBUG: Renderer 0:
> starting redraw overlay
> [2011-Dec-12 12:15:42|3.79|Renderer.cc|1245] DEBUG: Renderer 0: done
> redraw overlay
> [2011-Dec-12 12:15:42|3.8|Renderer.cc|704] DEBUG: Renderer 3: starting 
> redraw
> [2011-Dec-12 12:15:42|3.8|Renderer.cc|981] DEBUG: Renderer 3: done redraw
> [2011-Dec-12 12:15:42|3.8|Renderer.cc|997] DEBUG: Renderer 3: starting
> redraw overlay
> [2011-Dec-12 12:15:42|3.8|Renderer.cc|1245] DEBUG: Renderer 3: done
> redraw overlay
> [2011-Dec-12 12:15:42|3.8|Renderer.cc|704] DEBUG: Renderer 4: starting 
> redraw
> [2011-Dec-12 12:15:42|3.8|Renderer.cc|981] DEBUG: Renderer 4: done redraw
> [2011-Dec-12 12:15:42|3.8|Renderer.cc|997] DEBUG: Renderer 4: starting
> redraw overlay
> [2011-Dec-12 12:15:42|3.8|Renderer.cc|1245] DEBUG: Renderer 4: done
> redraw overlay
> [2011-Dec-12 12:15:42|3.81|Renderer.cc|704] DEBUG: Renderer 5: starting 
> redraw
> [2011-Dec-12 12:15:42|3.81|Renderer.cc|981] DEBUG: Renderer 5: done redraw
> [2011-Dec-12 12:15:42|3.81|Renderer.cc|997] DEBUG: Renderer 5:
> starting redraw overlay
> [2011-Dec-12 12:15:42|3.81|Renderer.cc|1245] DEBUG: Renderer 5: done
> redraw overlay
> [2011-Dec-12 12:15:42|3.81|ApplicationInterface.cc|508] DEBUG: --
> Removing overlays from all the floating dock widgets --
> [2011-Dec-12 12:15:42|3.81|ApplicationInterface.cc|516] DEBUG: --
> Unpicturizing the Viewer Interface --
> [2011-Dec-12 12:15:42|3.82|ApplicationInterface.cc|519] DEBUG: --
> Enabling the menubar --
> [2011-Dec-12 12:15:42|3.82|ApplicationInterface.cc|522] DEBUG: --
> Finish progress widget --
> [2011-Dec-12 12:15:42|3.82|Timer.cc|75] DEBUG: Timer stopped
> Segmentation fault

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• [Seg3D] Seg3D 2.1.2 Segmentation Fault, Fijoy Vadakkumpadan, 12/12/2011
  • [Seg3D] Re: Seg3D 2.1.2 Segmentation Fault, Ayla Khan, 12/12/2011

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