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---

Hello, Ayla,

Here is info for Seg3d on Solaris.

By the way, I am curious for Seg3D because I have an x-ray of my body in DICOM and I have some experience in geometry so to know better.

This is OpenSolaris installed in 2007 approximately

chris@alcestis:~/Seg3D_2.1.3-code/bin$ uname -a
SunOS alcestis 5.11 snv_111b i86pc i386 i86pc Solaris

(nevada) I think.

chris@alcestis:~/Seg3D_2.1.3-code/bin$ which make
/usr/gnu/bin/make

chris@alcestis:~/Seg3D_2.1.3-code/bin$ cmake -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON ../src
-- Configuring RPATH settings
-- Configuring External Packages
-- Configuring zlib
-- Configuring MatlabIO
-- Configuring libpng
-- Configuring teem
-- Configuring glew
-- Configuring freetype
-- Configuring tinyxml
-- Configuring SQLite
-- Configuring GDCM
-- Configuring insight toolkit
CMake Warning (dev) at Externals/itk/CMakeLists.txt:147 (LINK_DIRECTORIES):
  This command specifies the relative path

    .

  as a link directory.

  Policy CMP0015 is not set: link_directories() treats paths relative to the
  source dir.  Run "cmake --help-policy CMP0015" for policy details.  Use the
  cmake_policy command to set the policy and suppress this warning.
This warning is for project developers.  Use -Wno-dev to suppress it.

Attention: You have chosen to use the new statistics framework instead of the existing framework. The statistics classes have been re-designed/refactored and in several cases do not conform to the API of the older framework. You may need to change your code to use the new API.
Attention: You have chosen to use the files in the Review directory. The Copyright of these files has not been cleared up, and the coding style and API of the classes in the Review directory may change drastically as it get code reviews from the developers. Please set ITK_USE_REVIEW to OFF if you don't want to use these files.
-- Configuring MRC2000
-- Configuring python
-- Python version 3.2.0
-- Using unsigned short for unicode
-- Adding _thread as static module
-- Adding _io as static module
-- Adding _multiprocessing as static module
-- Adding zlib as static module
-- Adding atexit as static module
-- Adding _pickle as static module
-- Adding array as static module
-- Adding binascii as static module
-- Adding cmath as static module
-- Adding errno as static module
-- Adding math as static module
-- Adding posix as static module
-- Adding operator as static module
-- Adding signal as static module
-- Adding _md5 as static module
-- Adding _sha1 as static module
-- Adding _sha256 as static module
-- Adding _sha512 as static module
-- Adding time as static module
-- Adding _locale as static module
-- Adding _codecs as static module
-- Adding _weakref as static module
-- Adding _random as static module
-- Adding _bisect as static module
-- Adding _heapq as static module
-- Adding _lsprof as static module
-- Adding itertools as static module
-- Adding _collections as static module
-- Adding _symtable as static module
-- Adding mmap as static module
-- Adding _csv as static module
-- Adding _sre as static module
-- Adding parser as static module
-- Adding _struct as static module
-- Adding _datetime as static module
-- Adding _functools as static module
-- Adding _json as static module
-- Adding xxsubtype as static module
-- Adding zipimport as static module
-- Adding select as static module
-- Adding pwd as static module
-- Adding _posixsubprocess as static module
-- Adding fcntl as static module
-- Adding grp as static module
-- Adding _multibytecodec as static module
-- Adding _codecs_cn as static module
-- Adding _codecs_hk as static module
-- Adding _codecs_iso2022 as static module
-- Adding _codecs_jp as static module
-- Adding _codecs_kr as static module
-- Adding _codecs_tw as static module
-- Adding _string as static module
-- Configuring boost
-- Configuring Seg3D2
-- Configuring Seg3D Core
-- Configuring Seg3D Application
-- Configuring Seg3D Interface
-- Configuring Seg3D Plugins
-- Configuring Seg3D Resources
-- Configuring Seg3D main
-- Configuring Seg3D registered functions
-- Configuring action python wrapper functions
-- Configuring Seg3D packaging
-- Configuring done
-- Generating done
-- Build files have been written to: /export/home/chris/Seg3D_2.1.3-code/bin



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chris@alcestis:~/Seg3D_2.1.3-code/bin$ make
/usr/local/bin/cmake -H/export/home/chris/Seg3D_2.1.3-code/src -B/export/home/chris/Seg3D_2.1.3-code/bin --check-build-system CMakeFiles/Makefile.cmake 0
/usr/local/bin/cmake -E cmake_progress_start /export/home/chris/Seg3D_2.1.3-code/bin/CMakeFiles /export/home/chris/Seg3D_2.1.3-code/bin/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[1]: Entering directory `/export/home/chris/Seg3D_2.1.3-code/bin'
make -f Externals/zlib/CMakeFiles/zlib.dir/build.make Externals/zlib/CMakeFiles/zlib.dir/depend
make[2]: Entering directory `/export/home/chris/Seg3D_2.1.3-code/bin'
cd /export/home/chris/Seg3D_2.1.3-code/bin && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /export/home/chris/Seg3D_2.1.3-code/src /export/home/chris/Seg3D_2.1.3-code/src/Externals/zlib /export/home/chris/Seg3D_2.1.3-code/bin /export/home/chris/Seg3D_2.1.3-code/bin/Externals/zlib /export/home/chris/Seg3D_2.1.3-code/bin/Externals/zlib/CMakeFiles/zlib.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/export/home/chris/Seg3D_2.1.3-code/bin'
make -f Externals/zlib/CMakeFiles/zlib.dir/build.make Externals/zlib/CMakeFiles/zlib.dir/build
make[2]: Entering directory `/export/home/chris/Seg3D_2.1.3-code/bin'
Linking C static library libzlib.a
cd /export/home/chris/Seg3D_2.1.3-code/bin/Externals/zlib && /usr/local/bin/cmake -P CMakeFiles/zlib.dir/cmake_clean_target.cmake
cd /export/home/chris/Seg3D_2.1.3-code/bin/Externals/zlib && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/zlib.dir/link.txt --verbose=1
/usr/bin/ar cr libzlib.a  CMakeFiles/zlib.dir/adler32.c.o CMakeFiles/zlib.dir/compress.c.o CMakeFiles/zlib.dir/crc32.c.o CMakeFiles/zlib.dir/deflate.c.o CMakeFiles/zlib.dir/gzio.c.o CMakeFiles/zlib.dir/infback.c.o CMakeFiles/zlib.dir/inffast.c.o CMakeFiles/zlib.dir/inflate.c.o CMakeFiles/zlib.dir/inftrees.c.o CMakeFiles/zlib.dir/trees.c.o CMakeFiles/zlib.dir/uncompr.c.o CMakeFiles/zlib.dir/zutil.c.o
/usr/bin/ranlib libzlib.a
make[2]: Leaving directory `/export/home/chris/Seg3D_2.1.3-code/bin'
/usr/local/bin/cmake -E cmake_progress_report /export/home/chris/Seg3D_2.1.3-code/bin/CMakeFiles  100
[  1%] Built target zlib
make -f Externals/MatlabIO/CMakeFiles/MatlabIO.dir/build.make Externals/MatlabIO/CMakeFiles/MatlabIO.dir/depend
make[2]: Entering directory `/export/home/chris/Seg3D_2.1.3-code/bin'
cd /export/home/chris/Seg3D_2.1.3-code/bin && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /export/home/chris/Seg3D_2.1.3-code/src /export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO /export/home/chris/Seg3D_2.1.3-code/bin /export/home/chris/Seg3D_2.1.3-code/bin/Externals/MatlabIO /export/home/chris/Seg3D_2.1.3-code/bin/Externals/MatlabIO/CMakeFiles/MatlabIO.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/export/home/chris/Seg3D_2.1.3-code/bin'
make -f Externals/MatlabIO/CMakeFiles/MatlabIO.dir/build.make Externals/MatlabIO/CMakeFiles/MatlabIO.dir/build
make[2]: Entering directory `/export/home/chris/Seg3D_2.1.3-code/bin'
/usr/local/bin/cmake -E cmake_progress_report /export/home/chris/Seg3D_2.1.3-code/bin/CMakeFiles
[  1%] Building CXX object Externals/MatlabIO/CMakeFiles/MatlabIO.dir/matfile.cc.o
cd /export/home/chris/Seg3D_2.1.3-code/bin/Externals/MatlabIO && /usr/bin/c++   -DSCI_32BITS -DGLEW_STATIC -DTEEM_STATIC -DLIBXML_STATIC -DTINYXML_STATIC -DBOOST_ALL_NO_LIB -DQT_NO_KEYWORDS -DTIXML_USE_STL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DBUILD_WITH_PYTHON -DPy_NO_ENABLE_SHARED -DBOOST_PYTHON_STATIC_MODULE -DBOOST_PYTHON_STATIC_LIB -DZ_PREFIX -DQT_NO_DEBUG -O3 -DNDEBUG -I/usr/local/Trolltech/Qt-4.7.4/include -I/usr/local/Trolltech/Qt-4.7.4/include/QtOpenGL -I/usr/local/Trolltech/Qt-4.7.4/include/QtGui -I/usr/local/Trolltech/Qt-4.7.4/include/QtCore -I/export/home/chris/Seg3D_2.1.3-code/src/Externals/zlib    -o CMakeFiles/MatlabIO.dir/matfile.cc.o -c /export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfile.cc
In file included from /export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfile.h:92,
                 from /export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfile.cc:56:
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h: In member function `void MatlabIO::matfiledata::getandcast(T*, int)':
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:270: error: `u_int32_t' undeclared (first use this function)
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:270: error: (Each undeclared identifier is reported only once for each function it appears in.)
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:270: error: `ptr' undeclared (first use this function)
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:270: error: `u_int32_t' has not been declared
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:270: error: expected `>' before '*' token
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:270: error: expected `(' before '*' token
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:270: error: expected primary-_expression_ before '>' token
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:270: error: expected `)' before ';' token
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h: In member function `void MatlabIO::matfiledata::getandcast(T**, int, int)':
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:342: error: `u_int32_t' undeclared (first use this function)
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:342: error: `ptr' undeclared (first use this function)
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:342: error: `u_int32_t' has not been declared
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:342: error: expected `>' before '*' token
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:342: error: expected `(' before '*' token
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:342: error: expected primary-_expression_ before '>' token
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:342: error: expected `)' before ';' token
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h: In member function `void MatlabIO::matfiledata::getandcast(T***, int, int, int)':
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:422: error: `u_int32_t' undeclared (first use this function)
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:422: error: `ptr' undeclared (first use this function)
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:422: error: `u_int32_t' has not been declared
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:422: error: expected `>' before '*' token
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:422: error: expected `(' before '*' token
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:422: error: expected primary-_expression_ before '>' token
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:422: error: expected `)' before ';' token
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h: In member function `void MatlabIO::matfiledata::getandcastvector(std::vector<T, std::allocator<_CharT> >&)':
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:488: error: `u_int32_t' undeclared (first use this function)
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:488: error: `ptr' undeclared (first use this function)
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:488: error: `u_int32_t' has not been declared
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:488: error: expected `>' before '*' token
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:488: error: expected `(' before '*' token
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:488: error: expected primary-_expression_ before '>' token
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:488: error: expected `)' before ';' token
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h: In member function `T MatlabIO::matfiledata::getandcastvalue(int)':
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:541: error: `u_int32_t' undeclared (first use this function)
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:541: error: `ptr' undeclared (first use this function)
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:541: error: `u_int32_t' has not been declared
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:541: error: expected `>' before '*' token
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:541: error: expected `(' before '*' token
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:541: error: expected primary-_expression_ before '>' token
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:541: error: expected `)' before ';' token
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h: In member function `void MatlabIO::matfiledata::putandcast(T*, int, MatlabIO::matfilebase::mitype)':
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:602: error: `u_int32_t' undeclared (first use this function)
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:602: error: `ptr' undeclared (first use this function)
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:602: error: `u_int32_t' has not been declared
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:602: error: expected `>' before '*' token
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:602: error: expected `(' before '*' token
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:602: error: expected primary-_expression_ before '>' token
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:602: error: expected `)' before ';' token
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:603: error: `u_int32_t' has not been declared
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h: In member function `void MatlabIO::matfiledata::putandcast(T**, int, int, MatlabIO::matfilebase::mitype)':
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:668: error: `u_int32_t' undeclared (first use this function)
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:668: error: `ptr' undeclared (first use this function)
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:668: error: `u_int32_t' has not been declared
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:668: error: expected `>' before '*' token
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:668: error: expected `(' before '*' token
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:668: error: expected primary-_expression_ before '>' token
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:668: error: expected `)' before ';' token
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:670: error: `u_int32_t' has not been declared
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h: In member function `void MatlabIO::matfiledata::putandcast(T***, int, int, int, MatlabIO::matfilebase::mitype)':
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:738: error: `u_int32_t' undeclared (first use this function)
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:738: error: `ptr' undeclared (first use this function)
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:738: error: `u_int32_t' has not been declared
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:738: error: expected `>' before '*' token
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:738: error: expected `(' before '*' token
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:738: error: expected primary-_expression_ before '>' token
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:738: error: expected `)' before ';' token
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:740: error: `u_int32_t' has not been declared
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h: In member function `void MatlabIO::matfiledata::putandcastvector(std::vector<T, std::allocator<_CharT> >&, MatlabIO::matfilebase::mitype)':
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:802: error: `u_int32_t' undeclared (first use this function)
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:802: error: `ptr' undeclared (first use this function)
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:802: error: `u_int32_t' has not been declared
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:802: error: expected `>' before '*' token
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:802: error: expected `(' before '*' token
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:802: error: expected primary-_expression_ before '>' token
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:802: error: expected `)' before ';' token
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:803: error: `u_int32_t' has not been declared
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h: In member function `void MatlabIO::matfiledata::putandcastvalue(T, int)':
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:851: error: `u_int32_t' undeclared (first use this function)
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:851: error: `ptr' undeclared (first use this function)
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:851: error: `u_int32_t' has not been declared
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:851: error: expected `>' before '*' token
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:851: error: expected `(' before '*' token
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:851: error: expected primary-_expression_ before '>' token
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:851: error: expected `)' before ';' token
/export/home/chris/Seg3D_2.1.3-code/src/Externals/MatlabIO/matfiledata.h:851: error: `u_int32_t' has not been declared
make[2]: *** [Externals/MatlabIO/CMakeFiles/MatlabIO.dir/matfile.cc.o] Error 1
make[2]: Leaving directory `/export/home/chris/Seg3D_2.1.3-code/bin'
make[1]: *** [Externals/MatlabIO/CMakeFiles/MatlabIO.dir/all] Error 2
make[1]: Leaving directory `/export/home/chris/Seg3D_2.1.3-code/bin'
make: *** [all] Error 2
chris@alcestis:~/Seg3D_2.1.3-code/bin$

---

• [Seg3D] Installing on Solaris, Chris Arthur, 03/22/2012
  • [Seg3D] Re: Installing on Solaris, Ayla Khan, 03/22/2012
    • [Seg3D] Re: Re: Installing on Solaris, Chris Arthur, 03/25/2012
      • [Seg3D] Re: Re: Re: Installing on Solaris, Ayla Khan, 03/26/2012

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