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Re: [Seg3D] TILT segmentation


Chronological Thread 
  • From: Jess Tate <jess@sci.utah.edu>
  • To: Aleš Fidler <ales.fidler@mf.uni-lj.si>
  • Cc: seg3d@sci.utah.edu
  • Subject: Re: [Seg3D] TILT segmentation
  • Date: Tue, 23 Feb 2016 09:33:55 -0700
Hi Ales,

It looks like there is an implementation of tilt in matlab from the princeton website.  You can use this code with Seg3D through the python console and the matlab engine available in the 2015 versions of matlab.  Here is the website for running matlab in python (http://www.mathworks.com/help/matlab/matlab-engine-for-python.html) and here are some documents on the Seg3D python API (http://www.sci.utah.edu/devbuilds/seg3d_docs/python_snippets.pdf, http://www.sci.utah.edu/devbuilds/seg3d_docs/Seg3DBasicFunctionality.pdf).

Alternatively, you can export your data from seg3D in matlab format and run it in matlab.  

cheers,
Jess



On Feb 23, 2016, at 6:26 AM, Aleš Fidler <ales.fidler@mf.uni-lj.si> wrote:

In our study we are evaluating a gap between a tooth and a filling in micro CT images and segmentation is very challenging (see attached file). A Seg 3D is an excellent SW for this task. As gap is basically a fracture that occurs during polymerization shrinkage, a  recently published TILT segmentation seems very appropriate for this task http://tilt.princeton.edu/  Is there any possibility that TILT segmentation can be incorporated in Seg3D?
 
 
 
 
Best regards,
 
Aleš
 
 
 
izr. prof. dr. Aleš Fidler, dr.dent.med.
specialist za zobne bolezni in endodontijo
UKC Ljubljana, Stomatološka klinika,
Medicinska fakulteta, Katedra za zobne bolezni in normalno morfologijo zobnega organa
 
Assoc. Prof. Aleš Fidler, DMD, PhD
Endodontist
University of Ljubljana, Department of endodontics and restorative dentistry
Slovenia
 
 
 
 
<image.png><Deng et al Comp Geosci TILT 2016.pdf>_______________________________________________
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