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Re: [Seg3D] saving mask

Chronological Thread 
  • From: Kristen Zygmunt <>
  • To: Elizabeth Jurrus <>
  • Cc:,
  • Subject: Re: [Seg3D] saving mask
  • Date: Wed, 16 Mar 2016 12:38:44 -0600

You can save as an uncompressed nrrd by doing the following:

Go to Seg3D2->Preferences and select the General tab. Uncheck “Enable file
compression” and export the segmentation as nrrd again. I was able to open a
mask saved this way in Paraview v5.0.

> On Mar 16, 2016, at 9:34 AM, Elizabeth Jurrus <> wrote:
> forwarding to the seg3d mailing list...
> - liz
> --------
> Is there a way to save a mask in a vtk format? I need to use my mask for
> resampling in Paraview however due to the gzip encoding of the nrrd format
> Paraview cannot open the file. Ideally I'd like to use vtk format. Right
> now I'm loading my mask into 3DSlicer as a nrrd and then exporting as a
> vtk. But that's a silly work around.
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