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Re: [Seg3D] Seg3d-images

Chronological Thread 
  • From: Jess Tate <>
  • To: "" <>
  • Cc: juan leonardo molina vilchez <>
  • Subject: Re: [Seg3D] Seg3d-images
  • Date: Thu, 23 Jun 2016 17:08:17 -0600

Hi Juan,

Just to add to Paul's response, make sure that you use the Import from Image series option.  We generally have no problems with Seg3D importing data from osirix, and I was able to load the wrist data from the webpage you linked.  One thing to keep in mind is that the osirix data can contain several types of scans, which may or may not combine into a a coherent volume.  Also, there are types of data that Seg3D may read, but may not make as much sense to use in seg3D, such as the localization images (three orthogonal images) and any cine images (images of the same location but different time frames) as it doesn't support time dependent data.  


On Jun 23, 2016, at 4:49 PM, Paul Holcomb <> wrote:


Just to clarify the question: if I understand correctly, you have an MRI volume from this site that is a series of images, which you're importing into Seg3D and the images are displayed out of order?  Are you using the "Import from image series" option under the File menu to import the files? Are these files named in a specific order (ex. "Filename_001.tiff","Filename_002.tiff", ...)? If so, Seg3D will read them in the order the files are named. If this is the incorrect order, the only solution I can think of right now is to renumber the file names. Hope this helps!

Best wishes,

Paul Holcomb

On Thu, Jun 23, 2016, 4:40 PM juan leonardo molina vilchez <> wrote:
I have some MRI to work on seg3d, but the problem is that the data is organized in different files. So, when the data is imported to seg3d, it has not an order 
I would like to know how can i import images organized in files to seg3d. I attach the webpage where I got the MRI. I hope your nearly answer.

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