SCI Seg3D Mailing List

Text archives Help


Re: [Seg3D] MRI orientation and isosurface output


Chronological Thread 
  • From: Jess Tate <jess@sci.utah.edu>
  • To: "Stoner, Kirsten E" <kirsten-stoner@uiowa.edu>, "seg3d@sci.utah.edu" <seg3d@sci.utah.edu>
  • Subject: Re: [Seg3D] MRI orientation and isosurface output
  • Date: Mon, 11 Jul 2016 16:45:18 -0600
Hi Kristen,

That is the assumed orientation of the subject.  For most scans, this is true, but the subject can be orientated differently.  Seg3D will try to orient the xyz based on the input data.  The Isosurface points will be the same coordinate space as the volume as shown by the axis slices.  The short answer is yes and yes.

cheers,
Jess






On Jul 11, 2016, at 4:27 PM, Liz Jurrus <liz@sci.utah.edu> wrote:

Forwarding to the Seg3D mailing list.
- liz

On 7/11/16 2:47 PM, Stoner, Kirsten E wrote:

Hello,

 

My first email got bounced back but I’ve emailed before with questions. Maybe something has changed. What MRI orientation does Seg3D use? From the XYZ outputs it looks like RAI orientation (x: Right to Left, y: Anterior to Posterior, z: Inferior to Superior). Also are the isosurfaces exported in the same orientation? Thanks!

 

Kirsten

 


_______________________________________________
Seg3d mailing list:  Seg3d@sci.utah.edu
http://www.sci.utah.edu/software/seg3d.html
To unsubscribe, email sympa@lists.sci.utah.edu with the "unsubscribe seg3d" in the message body.


Archive powered by MHonArc 2.6.18.

Top of page