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[Seg3D] Seg3D2 export segmentations


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  • From: Timothy Brown <timothy@cis.jhu.edu>
  • To: seg3d@sci.utah.edu
  • Subject: [Seg3D] Seg3D2 export segmentations
  • Date: Tue, 7 Mar 2017 09:03:21 -0500 (EST)
  • Ironport-phdr: 9a23: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
Hi All,

We have been using Seg3D version 1.2 to create masks in Analyze format.

We have begun using Seg3D2 and I see that default output for segmentations is nrrd

Is there any option to export to Analyze format using newer version of Seg3D2, or can anyone recommend any scripting utilities to convert from nrrd to Analyze?

Thanks for any help you can provide.

-Tim

Timothy Brown, P.E. email: timothy@cis.jhu.edu
Associate Research Engineer phone: 410.516.7551
Center for Imaging Science fax: 410.516.4557
Johns Hopkins University
305 Clark Hall
3400 N. Charles Street
Baltimore, MD 21218

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