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[Seg3D] installation from source


Chronological Thread 
  • From: "Ozerov Dmitry (PSI)" <Dmitry.Ozerov@psi.ch>
  • To: "seg3d@sci.utah.edu" <seg3d@sci.utah.edu>
  • Subject: [Seg3D] installation from source
  • Date: Sun, 27 May 2018 07:58:31 +0000
  • Accept-language: en-US, de-CH

  Dear Support Team,

 i tried to install 2.4.2 from source on CentOS7.4. To install one needs to have
subversion installed as well as qt5-qtbase{-devel}, qt5-qtsvg{-devel}. Then 
the installation went without complaints, but the installed Seg3D crashed with
segmentation fault when any "new project" or "open project" button was pressed.
Experimentally we found that installation of qt5-qttools-devel helped, program
don't crash anymore, but after opening the project the panels are grey(empty)
(the central and three lateral, where one expects to see something). Here i need
to mention also that we try this installation on remote (not local) workstation, and
currently Seg3D is opened in NoMachine window (via ssh it doesn't work).

 I also tried to install 2.2.1, but there the build process had problem at this step:

[ 42%] Performing download step (git clone) for 'ITK_external'

cd /opt/psi/MX/Seg3D/2.2.1/bin/Externals/Source && /usr/bin/cmake -P /opt/psi/MX/Seg3D/2.2.1/bin/Externals/tmp/ITK_external/ITK_external-gitclone.cmake

Cloning into 'ITK_external'...

remote: Counting objects: 405185, done.

remote: Total 405185 (delta 0), reused 0 (delta 0), pack-reused 405184

Receiving objects: 100% (405185/405185), 314.95 MiB | 25.38 MiB/s, done.

Resolving deltas: 100% (322812/322812), done.

Checking connectivity... done.

Checking out files: 100% (13696/13696), done.

error: pathspec 'origin/seg3d_external_test' did not match any file(s) known to git.

CMake Error at /opt/psi/MX/Seg3D/2.2.1/bin/Externals/tmp/ITK_external/ITK_external-gitclone.cmake:49 (message):

  Failed to checkout tag: 'origin/seg3d_external_test'


 Any help or advices will be appreciated.


 Thanks,

 Dmitry 


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