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[Seg3D] Smoothing Outer Masks and Flipping Exported Mask

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  • From: Samantha Mosher <>
  • To: "" <>
  • Subject: [Seg3D] Smoothing Outer Masks and Flipping Exported Mask
  • Date: Mon, 2 Dec 2019 09:59:27 -0500


I hope you all are doing well! I’m Sammy Mosher, a student currently working on using Seg3D for editing different layers of the brain. Is there any tool or method to smooth outer layers of a series of masks that have a bumpy surface but no layer to constrain the outer layer? I had originally been using ‘Fast Dilate Erode’ but that needs a constraining mask to work. Also has anyone else had the issue of an edited mask that was converted into a compressed NIFTI data layer (using the Arithmetic tool) becoming a flipped version of its unedited data layer? Thank you!

-Sammy Mosher
Samantha Mosher

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