- From: Alan Morris <amorris@sci.utah.edu>
- To: shapeworks-dev-support@sci.utah.edu, Allen Sanderson <allen@sci.utah.edu>
- Subject: Re: [shapeworks-dev-support] SW Studio seg fault
- Date: Mon, 15 Jun 2020 16:49:08 -0600
- Ironport-sdr: sRC3Sl0T9Cg6cbo5F9P5D3q3YdH+3cBku51aYPnjVb/L6a7Geu1h1ZFIHQtvmyTHMJ5xq6T6f1 cvWoaZz8cv53n49BqXBZ8Tmk02rLlB1+0usRVXm6nMZ+NrJJLIj2+d6SAyDCo/a1D64uW9mr/Q oc/CEvS1osCqH1Yv9ljGBfGpJE6iZKfNdpDrfaOaFDGd+mg9ISfwdrwtLFH1t0cnr5T4jT1K5I 3bwopqV1j3yj8+nMQaKSgNhrPekkH8ixDT1RTjsPRTGqCY6cdJq+CukN1nWrYgriYF8IfC4Myl kcQ=
This crash appears to be fixed in v5.4 (release today).
Alan
On Tue, Jun 9, 2020 at 12:35 PM Allen Sanderson <allen@sci.utah.edu> wrote:
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Here is a bit more on the second seg fault I am getting
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Open SW Studio,
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Open the project,
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Select difference
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Click on Run Reconstruction.
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Here is the initial cost spew:
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There are 8071 / 8192 good points.
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Pmatrix - nnz = 96852
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Kmatrix - nnz = 2043081
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Lmatrix - nnz = 2236785
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0
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1
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#iterations: 2
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estimated error: 5.31546e-28
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5.31546e-28
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Computing Wmatrix:
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Mean: 45.0914
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Total: 45.0914
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#iterations: 2
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estimated error: 5.31545e-28
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5.31545e-28
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Computing Wmatrix:
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Mean: 42.454
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Total: 42.454
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..
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Isosurface: /tmp/_dense-noQC.vtk
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Segmentation fault
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here is crash stack:
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Thread 0 Crashed:: Dispatch queue: com.apple.main-thread
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0 libvtkCommonCore-8.2.1.dylib 0x00000001153f631d
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vtkGenericDataArray<vtkAOSDataArrayTemplate<float>,
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float>::GetComponent(long long, int) + 29
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1 libvtkFiltersCore-8.2.1.dylib 0x0000000114a22976
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vtkGlyph3D::Execute(vtkDataSet*, vtkInformationVector*, vtkPolyData*,
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vtkDataArray*, vtkDataArray*) + 4710
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2 libvtkFiltersCore-8.2.1.dylib 0x0000000114a21692
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vtkGlyph3D::RequestData(vtkInformation*, vtkInformationVector**,
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vtkInformationVector*) + 66
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3 libvtkCommonExecutionModel-8.2.1.dylib 0x0000000114de88e5
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vtkExecutive::CallAlgorithm(vtkInformation*, int, vtkInformationVector**,
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vtkInformationVector*) + 69
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4 libvtkCommonExecutionModel-8.2.1.dylib 0x0000000114de319d
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vtkDemandDrivenPipeline::ExecuteData(vtkInformation*,
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vtkInformationVector**, vtkInformationVector*) + 61
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5 libvtkCommonExecutionModel-8.2.1.dylib 0x0000000114dddc48
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vtkCompositeDataPipeline::ExecuteData(vtkInformation*,
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vtkInformationVector**, vtkInformationVector*) + 104
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6 libvtkCommonExecutionModel-8.2.1.dylib 0x0000000114de291c
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vtkDemandDrivenPipeline::ProcessRequest(vtkInformation*,
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vtkInformationVector**, vtkInformationVector*) + 1196
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7 libvtkCommonExecutionModel-8.2.1.dylib 0x0000000114e0afde
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vtkStreamingDemandDrivenPipeline::ProcessRequest(vtkInformation*,
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vtkInformationVector**, vtkInformationVector*) + 974
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8 libvtkCommonExecutionModel-8.2.1.dylib 0x0000000114e0b44e
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vtkStreamingDemandDrivenPipeline::Update(int, vtkInformationVector*) + 254
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9 edu.utah.sci.shapeworks.studio 0x000000010e1ca815
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Viewer::display_object(QSharedPointer<DisplayObject>) + 2021
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Cheers,
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Allen
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On Jun 9, 2020, at 11:47 AM, Allen Sanderson <allen@sci.utah.edu> wrote:
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As Alan gave me a template for groups I am loading it and getting a hard
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crash with the following:
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Open SW Studio,
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Open the project,
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Immediately click on “Difference” SW studio will crash, seg fault.
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I can do this consistently.
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However, if I pause until the initial “reconstructed” surface comes up it
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does not crash.
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Also, being these are the initial “reconstructed” surfaces which are not
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very good. I ran the reconstruction using the defaults. During this process
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SW Studio crashed as well. I am running it again to see if it crashes
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consistently for this case. As Alan has the data being used I am including
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my groups.xml file so it can be duplicated.
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<groups.xml>
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Cheers,
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Allen
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Allen Sanderson
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SCI Institute
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University of Utah
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