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Re: [shapeworks-users] Shapeworks 1.2 Win troubleshoot


Chronological Thread 
  • From: Josh Cates <cates@sci.utah.edu>
  • To: shapeworks-users@sci.utah.edu, Michael Harris <Michael.D.Harris@du.edu>
  • Cc: Joshua E Cates <josh.cates@carma.utah.edu>, Adam Cyr <Adam.J.Cyr@du.edu>
  • Subject: Re: [shapeworks-users] Shapeworks 1.2 Win troubleshoot
  • Date: Wed, 22 Oct 2014 12:54:02 -0600
Hi Mike,

At first glance, I don't see anything wrong with the input files
you've sent. I'll see what I can do about getting someone to have a
quick look.

Josh

On Mon, Oct 20, 2014 at 4:26 PM, Michael Harris <Michael.D.Harris@du.edu>
wrote:
> Hey Josh,
>
>
>
> As I mentioned a few weeks ago, we would like to try ShapeWorks for a SSM of
> the foot. To start, we have been trying a set of four feet.
>
>
>
> We have tried to run ShapeWorks in two ways:
>
> 1- Using the Windows v1.2.0 available on the SCI website
>
> 2- Using the protocol and Unix executables from the femur shape
> modeling paper I did with Manasi
>
>
>
> We are having trouble running the software in each case. On Windows, we
> have tried running with and without the Groom steps. After ShapeWorksRun we
> get points files but they form shapes that are just a mess and not anything
> like the feet we input. If we try to look at the individual samples in
> ShapeWorksView, the program either crashes or shows a mess of blocks that
> appear meaningless.
>
>
>
> In Unix, I keep getting a 'Segmentation fault' when trying to run the
> particle initialization. I have run the shapes through all the
> preprocessing steps that I used on the past, even the ones that are
> redundant with some of the preprocessing I do before ShapeWorks (e.g.
> aligning, trimming the bounding boxes, padding, filling holes, cutting out
> data that I don't want to affect the shape analysis).
>
>
>
> Attached is a folder with the 4 samples in nrrd format. As input to
> ShapeWorks we have also tried mha and tiff, but get the same results.
>
>
>
> Is it possible for you or one of your people to run this small sample set
> through ShapeWorks to see if you can get it to work? If there are newer
> executables that would be better than what are on the website, we would be
> happy to try them ourselves.
>
>
>
> Thanks,
>
> Mike
>
> ______________________________
>
> Michael D. Harris, PhD
>
> Center for Orthopaedic Biomechanics
>
> University of Denver
>
> michael.d.harris@du.edu
>
> www.du.edu/biomechanics
>
>

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