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[shapeworks-users] ShapeWorksRun crashing with an itk error


Chronological Thread 
  • From: Murat Maga <maga@uw.edu>
  • To: "shapeworks-users@sci.utah.edu" <shapeworks-users@sci.utah.edu>
  • Subject: [shapeworks-users] ShapeWorksRun crashing with an itk error
  • Date: Fri, 26 Aug 2016 07:28:14 +0000
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Any ideas what might be causing this error (log file is attached, but there is not much else in it)

 

....terminate called after throwing an instance of 'itk::ExceptionObject'

  what():  /root/Downloads/shapeworks/src/ITKParticleSystem/itkPowerOfTwoPointTree.txx:125:

itk::ERROR: PowerOfTwoPointTree(0x4936160): Point [6.79247, -1.12035, -1.23879] is not contained within tree domain [-5.8547, -11.3321, -5.84979] - [5.8547, 11.3321, 5.84979]

./runSWrun.sh: line 2: 40528 Aborted                 ShapeWorksRun shapeworks.run.xml

m_processing_mode = 3
m_number_of_particles = 256
m_optimization_iterations = 300
m_output_points_prefix = 128vox_points
m_output_transform_file = 128vox_transform_file
m_domains_per_shape = 1
m_timepts_per_subject = 1
m_starting_regularization = 100
m_ending_regularization = 0.1
m_iterations_per_split = 100
m_relative_weighting = 1
m_norm_penalty_weighting = 0
m_initial_relative_weighting = 20
m_initial_norm_penalty_weighting = 0
m_adaptivity_strength = 0
m_attributes_per_domain = 0
m_checkpointing_interval = 0
m_transform_file =
m_prefix_transform_file =
m_procrustes_interval = 0
m_recompute_regularization_interval = 1
m_procrustes_scaling = 1
m_adaptivity_mode = 0
m_keep_checkpoints = 0
m_optimization_iterations_completed = 0
Procrustes scaling is on
Mean curvature magnitude = 0.965109
Std deviation = 0.524155
Mean curvature magnitude = 0.947034
Std deviation = 0.495745
Mean curvature magnitude = 0.963333
Std deviation = 0.518701
Mean curvature magnitude = 0.957174
Std deviation = 0.479684
Mean curvature magnitude = 0.940083
Std deviation = 0.494711
Mean curvature magnitude = 0.94239
Std deviation = 0.515374
Mean curvature magnitude = 0.963786
Std deviation = 0.504302
Mean curvature magnitude = 0.959053
Std deviation = 0.531867
Mean curvature magnitude = 0.968449
Std deviation = 0.504273
Mean curvature magnitude = 1.00369
Std deviation = 0.534537
Mean curvature magnitude = 0.964024
Std deviation = 0.506254
Mean curvature magnitude = 0.95442
Std deviation = 0.507841
Mean curvature magnitude = 1.00874
Std deviation = 0.546503
Mean curvature magnitude = 0.968806
Std deviation = 0.529923
Mean curvature magnitude = 0.971526
Std deviation = 0.528312
Mean curvature magnitude = 0.995306
Std deviation = 0.540043
Mean curvature magnitude = 0.946527
Std deviation = 0.502275
Mean curvature magnitude = 0.963672
Std deviation = 0.50497
Mean curvature magnitude = 0.952991
Std deviation = 0.520569
Mean curvature magnitude = 0.96238
Std deviation = 0.529394
Mean curvature magnitude = 0.948735
Std deviation = 0.491601
Mean curvature magnitude = 0.975046
Std deviation = 0.518991
Mean curvature magnitude = 0.980283
Std deviation = 0.494158
Mean curvature magnitude = 0.946684
Std deviation = 0.489982
Mean curvature magnitude = 0.955773
Std deviation = 0.511034
Mean curvature magnitude = 0.943745
Std deviation = 0.497168
Mean curvature magnitude = 0.974495
Std deviation = 0.537702
Mean curvature magnitude = 0.965567
Std deviation = 0.505412
Mean curvature magnitude = 0.922469
Std deviation = 0.495325
Mean curvature magnitude = 0.971801
Std deviation = 0.514757
------------------------------
*** Initialize Step
------------------------------

Particle count: 2
....................................................................................................
Writing 128vox_points.00.wpts with 2 points
Writing 128vox_points.01.wpts with 2 points
Writing 128vox_points.02.wpts with 2 points
Writing 128vox_points.03.wpts with 2 points
Writing 128vox_points.04.wpts with 2 points
Writing 128vox_points.05.wpts with 2 points
Writing 128vox_points.06.wpts with 2 points
Writing 128vox_points.07.wpts with 2 points
Writing 128vox_points.08.wpts with 2 points
Writing 128vox_points.09.wpts with 2 points
Writing 128vox_points.10.wpts with 2 points
Writing 128vox_points.11.wpts with 2 points
Writing 128vox_points.12.wpts with 2 points
Writing 128vox_points.13.wpts with 2 points
Writing 128vox_points.14.wpts with 2 points
Writing 128vox_points.15.wpts with 2 points
Writing 128vox_points.16.wpts with 2 points
Writing 128vox_points.17.wpts with 2 points
Writing 128vox_points.18.wpts with 2 points
Writing 128vox_points.19.wpts with 2 points
Writing 128vox_points.20.wpts with 2 points
Writing 128vox_points.21.wpts with 2 points
Writing 128vox_points.22.wpts with 2 points
Writing 128vox_points.23.wpts with 2 points
Writing 128vox_points.24.wpts with 2 points
Writing 128vox_points.25.wpts with 2 points
Writing 128vox_points.26.wpts with 2 points
Writing 128vox_points.27.wpts with 2 points
Writing 128vox_points.28.wpts with 2 points
Writing 128vox_points.29.wpts with 2 points

Particle count: 4
....terminate called after throwing an instance of 'itk::ExceptionObject'
what():
/root/Downloads/shapeworks/src/ITKParticleSystem/itkPowerOfTwoPointTree.txx:125:
itk::ERROR: PowerOfTwoPointTree(0x4936160): Point [6.79247, -1.12035,
-1.23879] is not contained within tree domain [-5.8547, -11.3321, -5.84979] -
[5.8547, 11.3321, 5.84979]
./runSWrun.sh: line 2: 40528 Aborted ShapeWorksRun
shapeworks.run.xml

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