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Re: [shapeworks-users] Files Not Found Running Latest ShapeWorksRun v5.2.1 Binary


Chronological Thread 
  • From: wenzheng tao <wztao@cs.utah.edu>
  • To: shapeworks-users@sci.utah.edu, Alan Morris <amorris@sci.utah.edu>
  • Cc: Cameron Christensen <cam@sci.utah.edu>, Shireen Elhabian <shireen@sci.utah.edu>
  • Subject: Re: [shapeworks-users] Files Not Found Running Latest ShapeWorksRun v5.2.1 Binary
  • Date: Wed, 20 Nov 2019 08:50:21 -0700
Hi Alan,

Thanks for your suggestions! 'shapeworks-5.2.1' works on another system of 'openSUSE Leap', system info attached as 'systeminfo2.out'. I think the old system brings the problem with the latest version.

However, the scaling of ShapeWorksRun does not seem to be functioning, and this is why I want to try the latest version.

Please find attached a zip file containing the test for scaling. It contains segmentation, distance transform of ellipsoid samples and xml. I have set the 'procrustes_scaling' to 1 and 'procrustes_interval' to 1. And I found the surface of the coorespondences are not of the same size, while I thought that they should be after applying procrustes_scaling. I am reconstructing the surface from correspondences using 'ball pivot' method of meshlab.

Could you have a look at the test experiment and let me know how to do the scaling with ShapwWorks? Thanks for your time!

Wenzheng

On 2019-11-19 23:17, Alan Morris wrote:
Hi Wenzheng,

RHEL 7 is quite old (>5 years). You can try out previous release
where we built a legacy linux set of binaries that I believe will work
for you.

https://github.com/SCIInstitute/ShapeWorks/releases/download/v5.1/shapeworks-5.1-linux-legacy.zip

Thanks,
Alan

On Tue, Nov 19, 2019 at 3:31 PM Shireen Elhabian
<shireen@sci.utah.edu> wrote:

Hi Cam and Alan,

Would you mind looking into this?

thanks and best regards
Shireen

------------------------------------------
Shireen Elhabian, M.Sc., Ph.D.
Research Assistant Professor
School of Computing
Scientific Computing and Imaging Institute
University of Utah
WEB 2815
72 Central Campus Drive, Salt Lake City, UT, 84112
Phone (801) 587-3206
Fax (801) 585-6513
Home Page: http://www.sci.utah.edu/~shireen

On Nov 19, 2019, at 3:16 PM, wenzheng tao <wztao@cs.utah.edu>
wrote:

Hi,

I am using the latest ShapeWorks but got the error that some files
are not found. Could you help me find out what might be going wrong?

I am using 'Red Hat Enterprise Linux Server', as in attached file
'systeminfo.out'.

I downloaded the latest linux release shapeworks-5.2.1-linux.zip
from:


https://github.com/SCIInstitute/ShapeWorks/releases/download/v5.2.1/shapeworks-5.2.1-linux.zip

Then I unzipped it and add the binary directory
'~/shapeworks-5.2.1-linux/bin' into PATH.

I ran 'ShapeWorksRun xxx.xml' and got the output with errors in
attached file 'ShapeWorksRun1.out'.

I also activated the shapeworks conda environment that I installed
with an older version before.I ran 'ShapeWorksRun xxx.xml' and got
the output with the same errors in attached file
'ShapeWorksRun2.out'.

Besides, I am able to run python example scripts from old release
and old binary 'ShapeWorksRun5.0'.

--
Best Regards!
===============================================
Wenzheng Tao
School of Computing
University of Utah
===============================================
<systeminfo.out><ShapeWorksRun2.out><ShapeWorksRun1.out>

Attachment: check_swscale.zip
Description: Zip archive


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