Hi Alan,

Thanks for your suggestions! 'shapeworks-5.2.1' works on another system
of 'openSUSE Leap', system info attached as 'systeminfo2.out'. I think
the old system brings the problem with the latest version.

However, the scaling of ShapeWorksRun does not seem to be functioning,
and this is why I want to try the latest version.

Please find attached a zip file containing the test for scaling. It
contains segmentation, distance transform of ellipsoid samples and xml.
I have set the 'procrustes_scaling' to 1 and 'procrustes_interval' to 1.
And I found the surface of the coorespondences are not of the same size,
while I thought that they should be after applying procrustes_scaling. I
am reconstructing the surface from correspondences using 'ball pivot'
method of meshlab.

Could you have a look at the test experiment and let me know how to do
the scaling with ShapwWorks? Thanks for your time!

Wenzheng

On 2019-11-19 23:17, Alan Morris wrote:
> Hi Wenzheng,
>
> RHEL 7 is quite old (>5 years).  You can try out previous release
> where we built a legacy linux set of binaries that I believe will work
> for you.
>
> https://github.com/SCIInstitute/ShapeWorks/releases/download/v5.1/shapeworks-5.1-linux-legacy.zip
>
> Thanks,
> Alan
>
> On Tue, Nov 19, 2019 at 3:31 PM Shireen Elhabian
> <shireen@sci.utah.edu> wrote:
>
>> Hi Cam and Alan,
>>
>> Would you mind looking into this?
>>
>> thanks and best regards
>> Shireen
>>
>> ------------------------------------------
>> Shireen Elhabian, M.Sc., Ph.D.
>> Research Assistant Professor
>> School of Computing
>> Scientific Computing and Imaging Institute
>> University of Utah
>> WEB 2815
>> 72 Central Campus Drive, Salt Lake City, UT, 84112
>> Phone (801) 587-3206
>> Fax (801) 585-6513
>> Home Page: http://www.sci.utah.edu/~shireen
>>
>>> On Nov 19, 2019, at 3:16 PM, wenzheng tao <wztao@cs.utah.edu>
>> wrote:
>>>
>>> Hi,
>>>
>>> I am using the latest ShapeWorks but got the error that some files
>> are not found. Could you help me find out what might be going wrong?
>>>
>>> I am using 'Red Hat Enterprise Linux Server', as in attached file
>> 'systeminfo.out'.
>>>
>>> I downloaded the latest linux release shapeworks-5.2.1-linux.zip
>> from:
>>>
>>
> https://github.com/SCIInstitute/ShapeWorks/releases/download/v5.2.1/shapeworks-5.2.1-linux.zip
>>>
>>> Then I unzipped it and add the binary directory
>> '~/shapeworks-5.2.1-linux/bin' into PATH.
>>>
>>> I ran 'ShapeWorksRun xxx.xml' and got the output with errors in
>> attached file 'ShapeWorksRun1.out'.
>>>
>>> I also activated the shapeworks conda environment that I installed
>> with an older version before.I ran 'ShapeWorksRun xxx.xml' and got
>> the output with the same errors in attached file
>> 'ShapeWorksRun2.out'.
>>>
>>> Besides, I am able to run python example scripts from old release
>> and old binary 'ShapeWorksRun5.0'.
>>>
>>> --
>>> Best Regards!
>>> ===============================================
>>> Wenzheng Tao
>>> School of Computing
>>> University of Utah
>>> ===============================================
>>> <systeminfo.out><ShapeWorksRun2.out><ShapeWorksRun1.out>