SCIRun User Mailing List

Text archives Help


Re: [SCIRUN-USERS] Text- Based Low Resolution Torso Geometry Data


Chronological Thread 
  • From: "Arda Kurt" <ardakurtt@gmail.com>
  • To: "David Weinstein" <dmw@sci.utah.edu>
  • Cc: <scirun-users@sci.utah.edu>
  • Subject: Re: [SCIRUN-USERS] Text- Based Low Resolution Torso Geometry Data
  • Date: Mon, 16 Jan 2006 00:18:34 +0200
  • Domainkey-signature: a=rsa-sha1; q=dns; c=nofws; s=beta; d=gmail.com; h=received:message-id:from:to:cc:references:subject:date:mime-version:content-type:x-priority:x-msmail-priority:x-mailer:x-mimeole; b=rjtsEaw4ooXP0Ac/iSgufWFzpfKOwEXLPlNoNqVQ9f8fxS6jKRmUmuFdBkFrxO9lSwg3XqmVv+Hv0ABignW7+evyljrTbKVdYOyFrl76KQKEYhDo/oVdL8yBuvux2GSCqHaVe3yoyqg98bHXOS36NkYqlgBJc6RXlSsTYZbGbLA=
Hi David,
 
This function seems to be a c++ file, or similar in syntax and as far as know, SCIRun does not work on Windows. Then, this function is not useful for me since i am using Windows, is it?
The other problem is that, SCIRun dataset for low-resolution data includes only two *.fld files: one is for heart and the other is for skin. However, i need lung, muscle etc.
 
Thanks in advance,
 
Arda
----- Original Message -----
Sent: Sunday, January 15, 2006 11:55 PM
Subject: Re: [SCIRUN-USERS] Text- Based Low Resolution Torso Geometry Data

Hi Arda,

SCIRun has command-line tools for turning SCIRun data files into plain ASCII format -- they're in the SCIRun/obj/StandAlone/convert/ directory.  The one you should use for converting the surface files (*.ts.fld) is called TriSurfFieldToText.  You should run it with the -noPtsCount -noElementsCount -oneBasedIndexing arguments in order to convert the *.ts.fld files into map3d files.  For example:

% TriSurfFieldToText utahtorso-skin.ts.fld utahtorso-skin.pts utahtorso-skin.fac \
-noPtsCount -noElementsCount -oneBasedIndexing

Cheers,
Dave


On Jan 14, 2006, at 7:28 AM, Arda Kurt wrote:

Hello,
 
For my M. Sc. Thesis (Effect of Torso Inhomogeneities to the Body Surface Potential Distribution), I need a low-resolution text-based torso geometry data - including heart, lungs, muscle, skin mesh points and connectivities etc. - for running in map3d? SCI Web site has one dataset (utahtorso-lowres), however, the files are binary. The text version is also high-resolution that it takes days to run!!! I think SCIRun has some modules to convert a binary geometry data into text-based data.
 
Thanks for help.
 
Arda Kurt


Archive powered by MHonArc 2.6.16.

Top of page