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Hi,

I'm trying to set up scirun from source but I get the following error when trying to run.

luitjens@mmlab-3:/scratch/SCIRun/scirun> ./scirun
Parsing .scirunrc... /home/sci/luitjens/.scirunrc
*** glibc detected *** free(): invalid pointer: 0x08080580 ***
Thread "main"(pid 23865) caught signal SIGABRT (Abort)
Backtrace:
/scratch/SCIRun/scirun/lib/libCore_Thread.so [0x402668bd]
[0xffffe420]
[0xffffe410]
/lib/tls/libc.so.6(gsignal+0x51) [0x407922c1]
/lib/tls/libc.so.6(abort+0x1a5) [0x40793b75]
/lib/tls/libc.so.6 [0x407c67aa]
/lib/tls/libc.so.6 [0x407cc007]
/lib/tls/libc.so.6(__libc_free+0x8b) [0x407cd6cb]
/usr/local/lib/libstdc++.so.6(_ZdlPv+0x21) [0x43047e01]
/usr/local/lib/libstdc++.so.6(_ZNSs4_Rep10_M_destroyERKSaIcE+0x1d) [0x43024b3d]
/scratch/SCIRun/scirun/lib/libPackages_Uintah_Core_Disclosure.so(_ZNK6Uintah15TypeDescription7getNameEv+0x1ca) [0x42e57b3a]
/scratch/SCIRun/scirun/lib/libPackages_Uintah_Core_Disclosure.so(_ZN6Uintah15TypeDescription13register_typeEv+0xee) [0x42e57d6e]
/scratch/SCIRun/scirun/lib/libPackages_Uintah_Core_Disclosure.so(_ZN6Uintah15TypeDescriptionC1ENS0_4TypeERKSsPFPNS_8VariableEvEPKS0_+0x43) [0x42e57ee3]
/scratch/SCIRun/scirun/lib/libPackages_Uintah_Core_Datatypes.so(_ZN6Uintah16ParticleVariableIN6SCIRun6VectorEE18getTypeDescriptionEv+0x63) [0x42b6b223]
/scratch/SCIRun/scirun/lib/libPackages_Uintah_Core_Grid.so [0x42cc4317]
/scratch/SCIRun/scirun/lib/libPackages_Uintah_Core_Grid.so [0x42d8cc37]
/scratch/SCIRun/scirun/lib/libPackages_Uintah_Core_Grid.so [0x42c8168d]
/lib/ld-linux.so.2 [0x4000d55c]
/lib/ld-linux.so.2 [0x4000d63a]
/lib/tls/libc.so.6 [0x4085773d]
/lib/ld-linux.so.2 [0x4000d186]
/lib/tls/libc.so.6(_dl_open+0xb0) [0x40856be0]
/lib/libdl.so.2 [0x4067bda8]
/lib/ld-linux.so.2 [0x4000d186]
/lib/libdl.so.2 [0x4067c1b5]
/lib/libdl.so.2(dlopen+0x41) [0x4067bd31]
/scratch/SCIRun/scirun/lib/libCore_Util.so(_Z16GetLibraryHandlePKc+0xc8) [0x4029e528]
/scratch/SCIRun/scirun/lib/libCore_Util.so(_Z7findLibSs+0x2b7) [0x4029ede7]
/scratch/SCIRun/scirun/lib/libCore_Init.so(_Z10SCIRunInitSs+0xa9) [0x401f6209]
./scirun [0x804c635]
/lib/tls/libc.so.6(__libc_start_main+0xd0) [0x4077fe80]
./scirun(_ZN6SCIRun15AssertionFailedD1Ev+0x39) [0x804a9d1]
1118696960: main (state = running)

Abort signalled by pid: 23865
Occured for thread: "main"
resume(r)/dbx(d)/cvd(c)/kill thread(k)/exit(e)? e
Thread "main"(pid 23865) caught signal SIGINT (interrupt)
Backtrace:
/scratch/SCIRun/scirun/lib/libCore_Thread.so [0x402667c7]
[0xffffe420]
[0xffffe410]
/lib/tls/libc.so.6 [0x408307fe]
/usr/lib/libstdc++.so.5(_ZdlPv+0x21) [0x40713c61]
/scratch/SCIRun/scirun/lib/libCore_Util.so(_ZN6SCIRun11DebugStreamD1Ev+0x89) [0x4028fbb9]
/lib/tls/libc.so.6(exit+0x60) [0x40794df0]
/scratch/SCIRun/scirun/lib/libCore_Thread.so(_ZN6SCIRun6Thread7exitAllEi+0x69) [0x40266b99]
/scratch/SCIRun/scirun/lib/libCore_Thread.so(_ZN6SCIRun6Thread9niceAbortEPv+0x154) [0x4025e954]
/scratch/SCIRun/scirun/lib/libCore_Thread.so [0x402668bd]
[0xffffe420]
/lib/tls/libc.so.6(abort+0x1a5) [0x40793b75]
/lib/tls/libc.so.6 [0x407c67aa]
/lib/tls/libc.so.6 [0x407cc007]
/lib/tls/libc.so.6(__libc_free+0x8b) [0x407cd6cb]
/usr/local/lib/libstdc++.so.6(_ZdlPv+0x21) [0x43047e01]
/usr/local/lib/libstdc++.so.6(_ZNSs4_Rep10_M_destroyERKSaIcE+0x1d) [0x43024b3d]
/scratch/SCIRun/scirun/lib/libPackages_Uintah_Core_Disclosure.so(_ZNK6Uintah15TypeDescription7getNameEv+0x1ca) [0x42e57b3a]
/scratch/SCIRun/scirun/lib/libPackages_Uintah_Core_Disclosure.so(_ZN6Uintah15TypeDescription13register_typeEv+0xee) [0x42e57d6e]
/scratch/SCIRun/scirun/lib/libPackages_Uintah_Core_Disclosure.so(_ZN6Uintah15TypeDescriptionC1ENS0_4TypeERKSsPFPNS_8VariableEvEPKS0_+0x43) [0x42e57ee3]
/scratch/SCIRun/scirun/lib/libPackages_Uintah_Core_Datatypes.so(_ZN6Uintah16ParticleVariableIN6SCIRun6VectorEE18getTypeDescriptionEv+0x63) [0x42b6b223]
/scratch/SCIRun/scirun/lib/libPackages_Uintah_Core_Grid.so [0x42cc4317]
/scratch/SCIRun/scirun/lib/libPackages_Uintah_Core_Grid.so [0x42d8cc37]
/scratch/SCIRun/scirun/lib/libPackages_Uintah_Core_Grid.so [0x42c8168d]
/lib/ld-linux.so.2 [0x4000d55c]
/lib/ld-linux.so.2 [0x4000d63a]
/lib/tls/libc.so.6 [0x4085773d]
/lib/ld-linux.so.2 [0x4000d186]
/lib/tls/libc.so.6(_dl_open+0xb0) [0x40856be0]
/lib/libdl.so.2 [0x4067bda8]
/lib/ld-linux.so.2 [0x4000d186]
/lib/libdl.so.2 [0x4067c1b5]
/lib/libdl.so.2(dlopen+0x41) [0x4067bd31]
/scratch/SCIRun/scirun/lib/libCore_Util.so(_Z16GetLibraryHandlePKc+0xc8) [0x4029e528]
/scratch/SCIRun/scirun/lib/libCore_Util.so(_Z7findLibSs+0x2b7) [0x4029ede7]
/scratch/SCIRun/scirun/lib/libCore_Init.so(_Z10SCIRunInitSs+0xa9) [0x401f6209]
./scirun [0x804c635]
/lib/tls/libc.so.6(__libc_start_main+0xd0) [0x4077fe80]
./scirun(_ZN6SCIRun15AssertionFailedD1Ev+0x39) [0x804a9d1]
1118696960: main (state = running)

Abort signalled by pid: 23865
Occured for thread: "main"
resume(r)/dbx(d)/cvd(c)/kill thread(k)/exit(e)?


My machine is a linux box running Suse 10. here is the line I configured with: %../src/configure --with-thirdparty=/scratch/thirdparty/1.25.3/Linux/gcc-3.3.5-32bit --enable-package=Uintah --with-mpi=/usr/local
gcc -v gives the following output: gcc (GCC) 3.3.5 20050117 (prerelease) (SUSE Linux)


Anyone seen this before or know how to fix it?

Thanks,
Justin
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• [SCIRUN-USERS] SCIRun segfault, Justin Luitjens, 08/11/2006

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