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[SCIRUN-USERS] InterfaceWithMatlab: Could not read output matrix


Chronological Thread 
  • From: Lydia Dux-Santoy Hurtado <lyduxhur@teleco.upv.es>
  • To: scirun-users@sci.utah.edu
  • Subject: [SCIRUN-USERS] InterfaceWithMatlab: Could not read output matrix
  • Date: Mon, 1 Oct 2007 13:24:08 +0200


Hi all,

I'm a new user. I have installed SCIRun/BioPSE using CMake 2.4.7 and MS Visual
Studio .NET 2003.

I'd like to use MATLAB with SCIRun. I've tried to execute the example
"matlab-cage-tank-example.srn", but the module "InterfaceWithMatlab" doesn't
work properly and the Output Matrix cannot be readen. The log for
InterfaceWithMatlab says:
--------------------------------------------------------------------------------
REMARK: Dynamically compiling some code.
DynamicLoader - Successfully created
C:/scirun/SCIRun/bin/on-the-fly-libs/FldTMtlbAlgT.GFldTrSrfMhTrLnrLgnPtNDtBssdblvctrdbl.cc
DynamicLoader - Executing:
C:\\scirun\\SCIRun\\bin\\on-the-fly-libs\\win32make.bat
FldTMtlbAlgT.GFldTrSrfMhTrLnrLgnPtNDtBssdblvctrdbl. release
FldTMtlbAlgT.GFldTrSrfMhTrLnrLgnPtNDtBssdblvctrdbl.cc
C:/scirun\\SCIRun\\src\\Core\\Datatypes\\TetVolMesh.h(720) : warning C4996:
'std::hash_map<SCIRun::TetVolMesh<_Kty>::PFace,SCIRun::TetVolMesh<_Kty>::Face::index_type,SCIRun::TetVolMesh<_Kty>::FaceHash>':
el s?mbolo se ha declarado como deprecated
        C:/scirun\\SCIRun\\src\\Core\\Datatypes\\TetVolMesh.h(841) : vea la
referencia a la creaci?n de instancias de plantilla de clase
'SCIRun::TetVolMesh<Basis>' que se est? compilando
C:/scirun\\SCIRun\\src\\Core\\Datatypes\\TetVolMesh.h(721) : warning C4996:
'std::hash_map<SCIRun::TetVolMesh<_Kty>::PEdge,SCIRun::TetVolMesh<_Kty>::Edge::index_type,SCIRun::TetVolMesh<_Kty>::EdgeHash>':
el s?mbolo se ha declarado como deprecated
C:/scirun\\SCIRun\\src\\Core\\Datatypes\\PrismVolMesh.h(248) : warning C4996:
'std::hash_multiset<SCIRun::PrismVolMesh<_Kty>::Edge::index_type,SCIRun::PrismVolMesh<_Kty>::Edge::CellEdgeHasher>':
el s?mbolo se ha declarado como deprecated
        C:/scirun\\SCIRun\\src\\Core\\Datatypes\\PrismVolMesh.h(127) : vea la
referencia a la creaci?n de instancias de plantilla de clase
'SCIRun::PrismVolMesh<Basis>::Edge' que se est? compilando
        C:/scirun\\SCIRun\\src\\Core\\Datatypes\\PrismVolMesh.h(1059) : vea la
referencia a la creaci?n de instancias de plantilla de clase
'SCIRun::PrismVolMesh<Basis>' que se est? compilando
C:/scirun\\SCIRun\\src\\Core\\Datatypes\\PrismVolMesh.h(249) : warning C4996:
'std::hash_set<SCIRun::PrismVolMesh<_Kty>::Edge::index_type,SCIRun::PrismVolMesh<_Kty>::Edge::CellEdgeHasher>':
el s?mbolo se ha declarado como deprecated
C:/scirun\\SCIRun\\src\\Core\\Datatypes\\PrismVolMesh.h(471) : warning C4996:
'std::hash_multiset<SCIRun::PrismVolMesh<_Kty>::Face::index_type,SCIRun::PrismVolMesh<_Kty>::Face::CellFaceHasher>':
el s?mbolo se ha declarado como deprecated
        C:/scirun\\SCIRun\\src\\Core\\Datatypes\\PrismVolMesh.h(274) : vea la
referencia a la creaci?n de instancias de plantilla de clase
'SCIRun::PrismVolMesh<Basis>::Face' que se est? compilando
C:/scirun\\SCIRun\\src\\Core\\Datatypes\\PrismVolMesh.h(472) : warning C4996:
'std::hash_set<SCIRun::PrismVolMesh<_Kty>::Face::index_type,SCIRun::PrismVolMesh<_Kty>::Face::CellFaceHasher>':
el s?mbolo se ha declarado como deprecated
C:/scirun\\SCIRun\\src\\Core\\Datatypes\\HexVolMesh.h(811) : warning C4996:
'std::hash_map<SCIRun::HexVolMesh<_Kty>::PFace,SCIRun::HexVolMesh<_Kty>::Face::index_type,SCIRun::HexVolMesh<_Kty>::FaceHash>':
el s?mbolo se ha declarado como deprecated
        C:/scirun\\SCIRun\\src\\Core\\Datatypes\\HexVolMesh.h(869) : vea la
referencia a la creaci?n de instancias de plantilla de clase
'SCIRun::HexVolMesh<Basis>' que se est? compilando
C:/scirun\\SCIRun\\src\\Core\\Datatypes\\HexVolMesh.h(812) : warning C4996:
'std::hash_map<SCIRun::HexVolMesh<_Kty>::PEdge,SCIRun::HexVolMesh<_Kty>::Edge::index_type,SCIRun::HexVolMesh<_Kty>::EdgeHash>':
el s?mbolo se ha declarado como deprecated
Microsoft (R) Incremental Linker Version 7.10.3077
Copyright (C) Microsoft Corporation.  All rights reserved.

/out:FldTMtlbAlgT.GFldTrSrfMhTrLnrLgnPtNDtBssdblvctrdbl.exe
/out:FldTMtlbAlgT.GFldTrSrfMhTrLnrLgnPtNDtBssdblvctrdbl.dll
-dll
C:/scirun/SCIRun/bin/lib/Release/Core_Algorithms_ArrayMath.lib
C:/scirun/SCIRun/bin/lib/Release/Core_Algorithms_Converter.lib
C:/scirun/SCIRun/bin/lib/Release/Core_Algorithms_DataIO.lib
C:/scirun/SCIRun/bin/lib/Release/Core_Algorithms_DataStreaming.lib
C:/scirun/SCIRun/bin/lib/Release/Core_Algorithms_Fields.lib
C:/scirun/SCIRun/bin/lib/Release/Core_Algorithms_Geometry.lib
C:/scirun/SCIRun/bin/lib/Release/Core_Algorithms_Math.lib
C:/scirun/SCIRun/bin/lib/Release/Core_Algorithms_Regression.lib
C:/scirun/SCIRun/bin/lib/Release/Core_Algorithms_Util.lib
C:/scirun/SCIRun/bin/lib/Release/Core_Algorithms_Visualization.lib
C:/scirun/SCIRun/bin/lib/Release/Core_Basis.lib
C:/scirun/SCIRun/bin/lib/Release/Core_Bundle.lib
C:/scirun/SCIRun/bin/lib/Release/Core_Comm.lib
C:/scirun/SCIRun/bin/lib/Release/Core_Containers.lib
C:/scirun/SCIRun/bin/lib/Release/Core_Datatypes.lib
C:/scirun/SCIRun/bin/lib/Release/Core_Events.lib
C:/scirun/SCIRun/bin/lib/Release/Core_Exceptions.lib
C:/scirun/SCIRun/bin/lib/Release/Core_Geom.lib
C:/scirun/SCIRun/bin/lib/Release/Core_Geometry.lib
C:/scirun/SCIRun/bin/lib/Release/Core_GeomInterface.lib
C:/scirun/SCIRun/bin/lib/Release/Core_ICom.lib
C:/scirun/SCIRun/bin/lib/Release/Core_ImportExport.lib
C:/scirun/SCIRun/bin/lib/Release/Core_Init.lib
C:/scirun/SCIRun/bin/lib/Release/Core_Malloc.lib
C:/scirun/SCIRun/bin/lib/Release/Core_Math.lib
C:/scirun/SCIRun/bin/lib/Release/Core_Matlab.lib
C:/scirun/SCIRun/bin/lib/Release/Core_OS.lib
C:/scirun/SCIRun/bin/lib/Release/Core_Persistent.lib
C:/scirun/SCIRun/bin/lib/Release/Core_Services.lib
C:/scirun/SCIRun/bin/lib/Release/Core_Skinner.lib
C:/scirun/SCIRun/bin/lib/Release/Core_SystemCall.lib
C:/scirun/SCIRun/bin/lib/Release/Core_Thread.lib
C:/scirun/SCIRun/bin/lib/Release/Core_Util.lib
C:/scirun/SCIRun/bin/lib/Release/Core_Volume.lib
C:/scirun/SCIRun/bin/lib/Release/Core_XMLUtil.lib
C:/scirun/SCIRun/bin/lib/Release/Dataflow_Comm.lib
C:/scirun/SCIRun/bin/lib/Release/Dataflow_Constraints.lib
C:/scirun/SCIRun/bin/lib/Release/Dataflow_GuiInterface.lib
C:/scirun/SCIRun/bin/lib/Release/Dataflow_Modules_Bundle.lib
C:/scirun/SCIRun/bin/lib/Release/Dataflow_Modules_Converters.lib
C:/scirun/SCIRun/bin/lib/Release/Dataflow_Modules_DataArrayMath.lib
C:/scirun/SCIRun/bin/lib/Release/Dataflow_Modules_DataIO.lib
C:/scirun/SCIRun/bin/lib/Release/Dataflow_Modules_Examples.lib
C:/scirun/SCIRun/bin/lib/Release/Dataflow_Modules_Fields.lib
C:/scirun/SCIRun/bin/lib/Release/Dataflow_Modules_Math.lib
C:/scirun/SCIRun/bin/lib/Release/Dataflow_Modules_Render.lib
C:/scirun/SCIRun/bin/lib/Release/Dataflow_Modules_String.lib
C:/scirun/SCIRun/bin/lib/Release/Dataflow_Modules_Time.lib
C:/scirun/SCIRun/bin/lib/Release/Dataflow_Modules_Visualization.lib
C:/scirun/SCIRun/bin/lib/Release/Dataflow_Network.lib
C:/scirun/SCIRun/bin/lib/Release/Dataflow_TCLThread.lib
C:/scirun/SCIRun/bin/lib/Release/Dataflow_TkExtensions.lib
C:/scirun/SCIRun/bin/lib/Release/Dataflow_Widgets.lib
C:/scirun/SCIRun/bin/lib/Release/Packages_BioPSE_Core_Algorithms_Forward.lib
C:/scirun/SCIRun/bin/lib/Release/Packages_BioPSE_Core_Algorithms_NumApproximation.lib
C:/scirun/SCIRun/bin/lib/Release/Packages_BioPSE_Core_Datatypes.lib
C:/scirun/SCIRun/bin/lib/Release/Packages_BioPSE_Dataflow_Modules_DataIO.lib
C:/scirun/SCIRun/bin/lib/Release/Packages_BioPSE_Dataflow_Modules_Forward.lib
C:/scirun/SCIRun/bin/lib/Release/Packages_BioPSE_Dataflow_Modules_Inverse.lib
C:/scirun/SCIRun/bin/lib/Release/Packages_BioPSE_Dataflow_Modules_LeadField.lib
C:/scirun/SCIRun/bin/lib/Release/Packages_BioPSE_Dataflow_Modules_Modeling.lib
C:/scirun/SCIRun/bin/lib/Release/Packages_BioPSE_Dataflow_Modules_NeuroFEM.lib
C:/scirun/SCIRun/bin/lib/Release/Packages_BioPSE_Dataflow_Modules_Visualization.lib
C:/scirun/SCIRun/bin/lib/Release/Packages_MatlabInterface_Dataflow_Modules_DataIO.lib
C:/scirun/SCIRun/bin/lib/Release/Packages_MatlabInterface_Dataflow_Modules_Interface.lib
C:/scirun/SCIRun/bin/lib/Release/Packages_MatlabInterface_Services.lib
C:/scirun/SCIRun/bin/lib/Release/Packages_Teem_Dataflow_Modules_Converters.lib
C:/scirun/SCIRun/bin/lib/Release/Packages_Teem_Dataflow_Modules_DataIO.lib
C:/scirun/SCIRun/bin/lib/Release/Packages_Teem_Dataflow_Modules_Misc.lib
C:/scirun/SCIRun/bin/lib/Release/Packages_Teem_Dataflow_Modules_Tend.lib
C:/scirun/SCIRun/bin/lib/Release/Packages_Teem_Dataflow_Modules_Unu.lib
C:/scirun/thirdparty/lib/blt.lib
C:/scirun/thirdparty/lib/freetype.lib
C:/scirun/thirdparty/lib/itcl.lib
C:/scirun/thirdparty/lib/itclstubs32.lib
C:/scirun/thirdparty/lib/itk.lib
C:/scirun/thirdparty/lib/png.lib
C:/scirun/thirdparty/lib/tcl.lib
C:/scirun/thirdparty/lib/tclstub84.lib
C:/scirun/thirdparty/lib/teem.lib
C:/scirun/thirdparty/lib/tk.lib
C:/scirun/thirdparty/lib/tkstub84.lib
C:/scirun/thirdparty/lib/xml2.lib
C:/scirun/thirdparty/lib/z.lib
FldTMtlbAlgT.GFldTrSrfMhTrLnrLgnPtNDtBssdblvctrdbl.obj
   Creando biblioteca FldTMtlbAlgT.GFldTrSrfMhTrLnrLgnPtNDtBssdblvctrdbl.lib y
objeto FldTMtlbAlgT.GFldTrSrfMhTrLnrLgnPtNDtBssdblvctrdbl.exp
DynamicLoader - Successfully compiled
FldTMtlbAlgT.GFldTrSrfMhTrLnrLgnPtNDtBssdblvctrdbl.dll
REMARK: Dynamic compilation completed.
ERROR: InterfaceWithMatlab: Could not read output matrix
-------------------------------------------------------------------------------

What can I do?
 Thanks,
     Lydia
===========================================================================
== The SCIRun Users mailing list: send email to majordomo@sci.utah.edu   ==
== for more details.                                                     ==
== Please acknowledge use of SCIRun in your papers and reports:          ==
==   see http://software.sci.utah.edu/scirun-biopse_citation.bib         ==
===========================================================================





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