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Re: [SCIRUN-USERS] InterfaceWithMatlab: Could not read output matrix


Chronological Thread 
  • From: "Farid Harhad" <fharhad@cct.lsu.edu>
  • To: "Michael Callahan" <callahan@sci.utah.edu>
  • Cc: "Lydia Dux-Santoy Hurtado" <lyduxhur@teleco.upv.es>, scirun-users@sci.utah.edu
  • Subject: Re: [SCIRUN-USERS] InterfaceWithMatlab: Could not read output matrix
  • Date: Mon, 1 Oct 2007 23:11:36 -0500
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I have the same problem.  I concur with Lyndia. Check out the screenshot I took.  Maybe it will help you troubleshoot.

Thanks,

--Farid

PS: is there an document that walks you through the procedure of using the matlab modules?


On 10/1/07, Michael Callahan <callahan@sci.utah.edu> wrote:
It's in the nets directory specific to the matlab package.

src/Packages/MatlabInterface/nets/Optional/matlab-cage-tank-example.srn

  Michael

On Mon, 2007-10-01 at 09:29 -0500, Farid Harhad wrote:
> Hi Lydia,
>
> I'm new to scirun+matlab as well.  I wanted to try what you did, but I
> was unable to find the following network:
>
> "matlab-cage-tank-example.srn"
>
> in the "nets" folder.
>
> Where did you get it from?  Is this is some network you created?  If
> it's a scirun example, where can I get it from?
>
> Thank you,
>
> --Farid
>
>
>
>
> On 10/1/07, Lydia Dux-Santoy Hurtado <lyduxhur@teleco.upv.es> wrote:
>
>         Hi all,
>
>         I'm a new user. I have installed SCIRun/BioPSE using CMake
>         2.4.7 and MS Visual
>         Studio .NET 2003.
>
>         I'd like to use MATLAB with SCIRun. I've tried to execute the
>         example
>         "matlab-cage-tank-example.srn ", but the module
>         "InterfaceWithMatlab" doesn't
>         work properly and the Output Matrix cannot be readen. The log
>         for
>         InterfaceWithMatlab says:
>         --------------------------------------------------------------------------------
>         REMARK: Dynamically compiling some code.
>         DynamicLoader - Successfully created
>         C:/scirun/SCIRun/bin/on-the-fly-libs/FldTMtlbAlgT.GFldTrSrfMhTrLnrLgnPtNDtBssdblvctrdbl.cc
>         DynamicLoader - Executing:
>         C:\\scirun\\SCIRun\\bin\\on-the-fly-libs\\win32make.bat
>         FldTMtlbAlgT.GFldTrSrfMhTrLnrLgnPtNDtBssdblvctrdbl. release
>         FldTMtlbAlgT.GFldTrSrfMhTrLnrLgnPtNDtBssdblvctrdbl.cc
>         C:/scirun\\SCIRun\\src\\Core\\Datatypes\\TetVolMesh.h(720) :
>         warning C4996:
>         'std::hash_map<SCIRun::TetVolMesh<_Kty>::PFace,SCIRun::TetVolMesh<_Kty>::Face::index_type,SCIRun::TetVolMesh<_Kty>::FaceHash>':
>         el s?mbolo se ha declarado como deprecated
>                 C:/scirun\\SCIRun\\src\\Core\\Datatypes\
>         \TetVolMesh.h(841) : vea la
>         referencia a la creaci?n de instancias de plantilla de clase
>         'SCIRun::TetVolMesh<Basis>' que se est? compilando
>         C:/scirun\\SCIRun\\src\\Core\\Datatypes\\TetVolMesh.h(721) :
>         warning C4996:
>         'std::hash_map<SCIRun::TetVolMesh<_Kty>::PEdge,SCIRun::TetVolMesh<_Kty>::Edge::index_type,SCIRun::TetVolMesh<_Kty>::EdgeHash>':
>         el s?mbolo se ha declarado como deprecated
>         C:/scirun\\SCIRun\\src\\Core\\Datatypes\\PrismVolMesh.h(248) :
>         warning C4996:
>         'std::hash_multiset<SCIRun::PrismVolMesh<_Kty>::Edge::index_type,SCIRun::PrismVolMesh<_Kty>::Edge::CellEdgeHasher>':
>         el s?mbolo se ha declarado como deprecated
>                 C:/scirun\\SCIRun\\src\\Core\\Datatypes\
>         \PrismVolMesh.h(127) : vea la
>         referencia a la creaci?n de instancias de plantilla de clase
>         'SCIRun::PrismVolMesh<Basis>::Edge' que se est? compilando
>                 C:/scirun\\SCIRun\\src\\Core\\Datatypes\
>         \PrismVolMesh.h(1059) : vea la
>         referencia a la creaci?n de instancias de plantilla de clase
>         'SCIRun::PrismVolMesh<Basis>' que se est? compilando
>         C:/scirun\\SCIRun\\src\\Core\\Datatypes\\PrismVolMesh.h(249) :
>         warning C4996:
>         'std::hash_set<SCIRun::PrismVolMesh<_Kty>::Edge::index_type,SCIRun::PrismVolMesh<_Kty>::Edge::CellEdgeHasher>':
>         el s?mbolo se ha declarado como deprecated
>         C:/scirun\\SCIRun\\src\\Core\\Datatypes\\PrismVolMesh.h(471) :
>         warning C4996:
>         'std::hash_multiset<SCIRun::PrismVolMesh<_Kty>::Face::index_type,SCIRun::PrismVolMesh<_Kty>::Face::CellFaceHasher>':
>         el s?mbolo se ha declarado como deprecated
>                 C:/scirun\\SCIRun\\src\\Core\\Datatypes\
>         \PrismVolMesh.h(274) : vea la
>         referencia a la creaci?n de instancias de plantilla de clase
>         'SCIRun::PrismVolMesh<Basis>::Face' que se est? compilando
>         C:/scirun\\SCIRun\\src\\Core\\Datatypes\\PrismVolMesh.h(472) :
>         warning C4996:
>         'std::hash_set<SCIRun::PrismVolMesh<_Kty>::Face::index_type,SCIRun::PrismVolMesh<_Kty>::Face::CellFaceHasher>':
>         el s?mbolo se ha declarado como deprecated
>         C:/scirun\\SCIRun\\src\\Core\\Datatypes\\HexVolMesh.h(811) :
>         warning C4996:
>         'std::hash_map<SCIRun::HexVolMesh<_Kty>::PFace,SCIRun::HexVolMesh<_Kty>::Face::index_type,SCIRun::HexVolMesh<_Kty>::FaceHash>':
>         el s?mbolo se ha declarado como deprecated
>                 C:/scirun\\SCIRun\\src\\Core\\Datatypes\
>         \HexVolMesh.h(869) : vea la
>         referencia a la creaci?n de instancias de plantilla de clase
>         'SCIRun::HexVolMesh<Basis>' que se est? compilando
>         C:/scirun\\SCIRun\\src\\Core\\Datatypes\\HexVolMesh.h(812) :
>         warning C4996:
>         'std::hash_map<SCIRun::HexVolMesh<_Kty>::PEdge,SCIRun::HexVolMesh<_Kty>::Edge::index_type,SCIRun::HexVolMesh<_Kty>::EdgeHash>':
>         el s?mbolo se ha declarado como deprecated
>         Microsoft (R) Incremental Linker Version 7.10.3077
>         Copyright (C) Microsoft Corporation.  All rights reserved.
>
>         /out: FldTMtlbAlgT.GFldTrSrfMhTrLnrLgnPtNDtBssdblvctrdbl.exe
>         /out:FldTMtlbAlgT.GFldTrSrfMhTrLnrLgnPtNDtBssdblvctrdbl.dll
>         -dll
>         C:/scirun/SCIRun/bin/lib/Release/Core_Algorithms_ArrayMath.lib
>         C:/scirun/SCIRun/bin/lib/Release/Core_Algorithms_Converter.lib
>         C:/scirun/SCIRun/bin/lib/Release/Core_Algorithms_DataIO.lib
>         C:/scirun/SCIRun/bin/lib/Release/Core_Algorithms_DataStreaming.lib
>         C:/scirun/SCIRun/bin/lib/Release/Core_Algorithms_Fields.lib
>         C:/scirun/SCIRun/bin/lib/Release/Core_Algorithms_Geometry.lib
>         C:/scirun/SCIRun/bin/lib/Release/Core_Algorithms_Math.lib
>         C:/scirun/SCIRun/bin/lib/Release/Core_Algorithms_Regression.lib
>         C:/scirun/SCIRun/bin/lib/Release/Core_Algorithms_Util.lib
>         C:/scirun/SCIRun/bin/lib/Release/Core_Algorithms_Visualization.lib
>         C:/scirun/SCIRun/bin/lib/Release/Core_Basis.lib
>         C:/scirun/SCIRun/bin/lib/Release/Core_Bundle.lib
>         C:/scirun/SCIRun/bin/lib/Release/Core_Comm.lib
>         C:/scirun/SCIRun/bin/lib/Release/Core_Containers.lib
>         C:/scirun/SCIRun/bin/lib/Release/Core_Datatypes.lib
>         C:/scirun/SCIRun/bin/lib/Release/Core_Events.lib
>         C:/scirun/SCIRun/bin/lib/Release/Core_Exceptions.lib
>         C:/scirun/SCIRun/bin/lib/Release/Core_Geom.lib
>         C:/scirun/SCIRun/bin/lib/Release/Core_Geometry.lib
>         C:/scirun/SCIRun/bin/lib/Release/Core_GeomInterface.lib
>         C:/scirun/SCIRun/bin/lib/Release/Core_ICom.lib
>         C:/scirun/SCIRun/bin/lib/Release/Core_ImportExport.lib
>         C:/scirun/SCIRun/bin/lib/Release/Core_Init.lib
>         C:/scirun/SCIRun/bin/lib/Release/Core_Malloc.lib
>         C:/scirun/SCIRun/bin/lib/Release/Core_Math.lib
>         C:/scirun/SCIRun/bin/lib/Release/Core_Matlab.lib
>         C:/scirun/SCIRun/bin/lib/Release/Core_OS.lib
>         C:/scirun/SCIRun/bin/lib/Release/Core_Persistent.lib
>         C:/scirun/SCIRun/bin/lib/Release/Core_Services.lib
>         C:/scirun/SCIRun/bin/lib/Release/Core_Skinner.lib
>         C:/scirun/SCIRun/bin/lib/Release/Core_SystemCall.lib
>         C:/scirun/SCIRun/bin/lib/Release/Core_Thread.lib
>         C:/scirun/SCIRun/bin/lib/Release/Core_Util.lib
>         C:/scirun/SCIRun/bin/lib/Release/Core_Volume.lib
>         C:/scirun/SCIRun/bin/lib/Release/Core_XMLUtil.lib
>         C:/scirun/SCIRun/bin/lib/Release/Dataflow_Comm.lib
>         C:/scirun/SCIRun/bin/lib/Release/Dataflow_Constraints.lib
>         C:/scirun/SCIRun/bin/lib/Release/Dataflow_GuiInterface.lib
>         C:/scirun/SCIRun/bin/lib/Release/Dataflow_Modules_Bundle.lib
>         C:/scirun/SCIRun/bin/lib/Release/Dataflow_Modules_Converters.lib
>         C:/scirun/SCIRun/bin/lib/Release/Dataflow_Modules_DataArrayMath.lib
>         C:/scirun/SCIRun/bin/lib/Release/Dataflow_Modules_DataIO.lib
>         C:/scirun/SCIRun/bin/lib/Release/Dataflow_Modules_Examples.lib
>         C:/scirun/SCIRun/bin/lib/Release/Dataflow_Modules_Fields.lib
>         C:/scirun/SCIRun/bin/lib/Release/Dataflow_Modules_Math.lib
>         C:/scirun/SCIRun/bin/lib/Release/Dataflow_Modules_Render.lib
>         C:/scirun/SCIRun/bin/lib/Release/Dataflow_Modules_String.lib
>         C:/scirun/SCIRun/bin/lib/Release/Dataflow_Modules_Time.lib
>         C:/scirun/SCIRun/bin/lib/Release/Dataflow_Modules_Visualization.lib
>         C:/scirun/SCIRun/bin/lib/Release/Dataflow_Network.lib
>         C:/scirun/SCIRun/bin/lib/Release/Dataflow_TCLThread.lib
>         C:/scirun/SCIRun/bin/lib/Release/Dataflow_TkExtensions.lib
>         C:/scirun/SCIRun/bin/lib/Release/Dataflow_Widgets.lib
>         C:/scirun/SCIRun/bin/lib/Release/Packages_BioPSE_Core_Algorithms_Forward.lib
>         C:/scirun/SCIRun/bin/lib/Release/Packages_BioPSE_Core_Algorithms_NumApproximation.lib
>         C:/scirun/SCIRun/bin/lib/Release/Packages_BioPSE_Core_Datatypes.lib
>         C:/scirun/SCIRun/bin/lib/Release/Packages_BioPSE_Dataflow_Modules_DataIO.lib
>         C:/scirun/SCIRun/bin/lib/Release/Packages_BioPSE_Dataflow_Modules_Forward.lib
>         C:/scirun/SCIRun/bin/lib/Release/Packages_BioPSE_Dataflow_Modules_Inverse.lib
>         C:/scirun/SCIRun/bin/lib/Release/Packages_BioPSE_Dataflow_Modules_LeadField.lib
>         C:/scirun/SCIRun/bin/lib/Release/Packages_BioPSE_Dataflow_Modules_Modeling.lib
>         C:/scirun/SCIRun/bin/lib/Release/Packages_BioPSE_Dataflow_Modules_NeuroFEM.lib
>         C:/scirun/SCIRun/bin/lib/Release/Packages_BioPSE_Dataflow_Modules_Visualization.lib
>         C:/scirun/SCIRun/bin/lib/Release/Packages_MatlabInterface_Dataflow_Modules_DataIO.lib
>         C:/scirun/SCIRun/bin/lib/Release/Packages_MatlabInterface_Dataflow_Modules_Interface.lib
>         C:/scirun/SCIRun/bin/lib/Release/Packages_MatlabInterface_Services.lib
>         C:/scirun/SCIRun/bin/lib/Release/Packages_Teem_Dataflow_Modules_Converters.lib
>         C:/scirun/SCIRun/bin/lib/Release/Packages_Teem_Dataflow_Modules_DataIO.lib
>         C:/scirun/SCIRun/bin/lib/Release/Packages_Teem_Dataflow_Modules_Misc.lib
>         C:/scirun/SCIRun/bin/lib/Release/Packages_Teem_Dataflow_Modules_Tend.lib
>         C:/scirun/SCIRun/bin/lib/Release/Packages_Teem_Dataflow_Modules_Unu.lib
>         C:/scirun/thirdparty/lib/blt.lib
>         C:/scirun/thirdparty/lib/freetype.lib
>         C:/scirun/thirdparty/lib/itcl.lib
>         C:/scirun/thirdparty/lib/itclstubs32.lib
>         C:/scirun/thirdparty/lib/itk.lib
>         C:/scirun/thirdparty/lib/png.lib
>         C:/scirun/thirdparty/lib/tcl.lib
>         C:/scirun/thirdparty/lib/tclstub84.lib
>         C:/scirun/thirdparty/lib/teem.lib
>         C:/scirun/thirdparty/lib/tk.lib
>         C:/scirun/thirdparty/lib/tkstub84.lib
>         C:/scirun/thirdparty/lib/xml2.lib
>         C:/scirun/thirdparty/lib/z.lib
>         FldTMtlbAlgT.GFldTrSrfMhTrLnrLgnPtNDtBssdblvctrdbl.obj
>            Creando biblioteca
>         FldTMtlbAlgT.GFldTrSrfMhTrLnrLgnPtNDtBssdblvctrdbl.lib y
>         objeto FldTMtlbAlgT.GFldTrSrfMhTrLnrLgnPtNDtBssdblvctrdbl.exp
>         DynamicLoader - Successfully compiled
>         FldTMtlbAlgT.GFldTrSrfMhTrLnrLgnPtNDtBssdblvctrdbl.dll
>         REMARK: Dynamic compilation completed.
>         ERROR: InterfaceWithMatlab: Could not read output matrix
>         -------------------------------------------------------------------------------
>
>         What can I do?
>         Thanks,
>              Lydia
>         ===========================================================================
>         == The SCIRun Users mailing list: send email to
>         majordomo@sci.utah.edu   ==
>         == for more details.
>         ==
>         == Please acknowledge use of SCIRun in your papers and
>         reports:          ==
>         ==   see
>         http://software.sci.utah.edu/scirun-biopse_citation.bib
>         ==
>         ===========================================================================
>


Attachment: matlab+scirun.png
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