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Hi

It looks like SCIRun cannot find the /tmp directory which it needs
for communicating with matlab. It was originally designed to only
work on OSX and Linux.

Try to change the SCIRUN_SERV_TMP_DIR in the .scirunrc file. That
variable should control where the files are written.

best,

Jeroen



On Oct 1, 2007, at 9:08 PM, Michael Callahan wrote:

> It's in the nets directory specific to the matlab package.
>
> src/Packages/MatlabInterface/nets/Optional/matlab-cage-tank-
> example.srn
>
>   Michael
>
> On Mon, 2007-10-01 at 09:29 -0500, Farid Harhad wrote:
>> Hi Lydia,
>>
>> I'm new to scirun+matlab as well.  I wanted to try what you did,
>> but I
>> was unable to find the following network:
>>
>> "matlab-cage-tank-example.srn "
>>
>> in the "nets" folder.
>>
>> Where did you get it from?  Is this is some network you created?  If
>> it's a scirun example, where can I get it from?
>>
>> Thank you,
>>
>> --Farid
>>
>>
>>
>>
>> On 10/1/07, Lydia Dux-Santoy Hurtado <lyduxhur@teleco.upv.es > wrote:
>>
>>         Hi all,
>>
>>         I'm a new user. I have installed SCIRun/BioPSE using CMake
>>         2.4.7 and MS Visual
>>         Studio .NET 2003.
>>
>>         I'd like to use MATLAB with SCIRun. I've tried to execute the
>>         example
>>         "matlab-cage-tank-example.srn ", but the module
>>         "InterfaceWithMatlab" doesn't
>>         work properly and the Output Matrix cannot be readen. The log
>>         for
>>         InterfaceWithMatlab says:
>>
>> ---------------------------------------------------------------------
>> -----------
>>         REMARK: Dynamically compiling some code.
>>         DynamicLoader - Successfully created
>>         C:/scirun/SCIRun/bin/on-the-fly-libs/
>> FldTMtlbAlgT.GFldTrSrfMhTrLnrLgnPtNDtBssdblvctrdbl.cc
>>         DynamicLoader - Executing:
>>         C:\\scirun\\SCIRun\\bin\\on-the-fly-libs\\win32make.bat
>>         FldTMtlbAlgT.GFldTrSrfMhTrLnrLgnPtNDtBssdblvctrdbl . release
>>         FldTMtlbAlgT.GFldTrSrfMhTrLnrLgnPtNDtBssdblvctrdbl.cc
>>         C:/scirun\\SCIRun\\src\\Core\\Datatypes\\TetVolMesh.h(720) :
>>         warning C4996:
>>
>> 'std::hash_map<SCIRun::TetVolMesh<_Kty>::PFace,SCIRun::TetVolMesh<_Kt
>> y>::Face::index_type,SCIRun::TetVolMesh<_Kty>::FaceHash>':
>>         el s?mbolo se ha declarado como deprecated
>>                 C:/scirun\\SCIRun\\src\\Core\\Datatypes\
>>         \TetVolMesh.h(841) : vea la
>>         referencia a la creaci?n de instancias de plantilla de clase
>>         'SCIRun::TetVolMesh<Basis>' que se est? compilando
>>         C:/scirun\\SCIRun\\src\\Core\\Datatypes\\TetVolMesh.h(721) :
>>         warning C4996:
>>
>> 'std::hash_map<SCIRun::TetVolMesh<_Kty>::PEdge,SCIRun::TetVolMesh<_Kt
>> y>::Edge::index_type,SCIRun::TetVolMesh<_Kty>::EdgeHash>':
>>         el s?mbolo se ha declarado como deprecated
>>         C:/scirun\\SCIRun\\src\\Core\\Datatypes\\PrismVolMesh.h
>> (248) :
>>         warning C4996:
>>
>> 'std::hash_multiset<SCIRun::PrismVolMesh<_Kty>::Edge::index_type,SCIR
>> un::PrismVolMesh<_Kty>::Edge::CellEdgeHasher>':
>>         el s?mbolo se ha declarado como deprecated
>>                 C:/scirun\\SCIRun\\src\\Core\\Datatypes\
>>         \PrismVolMesh.h(127) : vea la
>>         referencia a la creaci?n de instancias de plantilla de clase
>>         'SCIRun::PrismVolMesh<Basis>::Edge' que se est? compilando
>>                 C:/scirun\\SCIRun\\src\\Core\\Datatypes\
>>         \PrismVolMesh.h(1059) : vea la
>>         referencia a la creaci?n de instancias de plantilla de clase
>>         'SCIRun::PrismVolMesh<Basis>' que se est? compilando
>>         C:/scirun\\SCIRun\\src\\Core\\Datatypes\\PrismVolMesh.h
>> (249) :
>>         warning C4996:
>>
>> 'std::hash_set<SCIRun::PrismVolMesh<_Kty>::Edge::index_type,SCIRun::P
>> rismVolMesh<_Kty>::Edge::CellEdgeHasher>':
>>         el s?mbolo se ha declarado como deprecated
>>         C:/scirun\\SCIRun\\src\\Core\\Datatypes\\PrismVolMesh.h
>> (471) :
>>         warning C4996:
>>
>> 'std::hash_multiset<SCIRun::PrismVolMesh<_Kty>::Face::index_type,SCIR
>> un::PrismVolMesh<_Kty>::Face::CellFaceHasher>':
>>         el s?mbolo se ha declarado como deprecated
>>                 C:/scirun\\SCIRun\\src\\Core\\Datatypes\
>>         \PrismVolMesh.h(274) : vea la
>>         referencia a la creaci?n de instancias de plantilla de clase
>>         'SCIRun::PrismVolMesh<Basis>::Face' que se est? compilando
>>         C:/scirun\\SCIRun\\src\\Core\\Datatypes\\PrismVolMesh.h
>> (472) :
>>         warning C4996:
>>
>> 'std::hash_set<SCIRun::PrismVolMesh<_Kty>::Face::index_type,SCIRun::P
>> rismVolMesh<_Kty>::Face::CellFaceHasher>':
>>         el s?mbolo se ha declarado como deprecated
>>         C:/scirun\\SCIRun\\src\\Core\\Datatypes\\HexVolMesh.h(811) :
>>         warning C4996:
>>
>> 'std::hash_map<SCIRun::HexVolMesh<_Kty>::PFace,SCIRun::HexVolMesh<_Kt
>> y>::Face::index_type,SCIRun::HexVolMesh<_Kty>::FaceHash>':
>>         el s?mbolo se ha declarado como deprecated
>>                 C:/scirun\\SCIRun\\src\\Core\\Datatypes\
>>         \HexVolMesh.h(869) : vea la
>>         referencia a la creaci?n de instancias de plantilla de clase
>>         'SCIRun::HexVolMesh<Basis>' que se est? compilando
>>         C:/scirun\\SCIRun\\src\\Core\\Datatypes\\HexVolMesh.h(812) :
>>         warning C4996:
>>
>> 'std::hash_map<SCIRun::HexVolMesh<_Kty>::PEdge,SCIRun::HexVolMesh<_Kt
>> y>::Edge::index_type,SCIRun::HexVolMesh<_Kty>::EdgeHash>':
>>         el s?mbolo se ha declarado como deprecated
>>         Microsoft (R) Incremental Linker Version 7.10.3077
>>         Copyright (C) Microsoft Corporation.  All rights reserved.
>>
>>         /out:FldTMtlbAlgT.GFldTrSrfMhTrLnrLgnPtNDtBssdblvctrdbl.exe
>>         /out:FldTMtlbAlgT.GFldTrSrfMhTrLnrLgnPtNDtBssdblvctrdbl.dll
>>         -dll
>>         C:/scirun/SCIRun/bin/lib/Release/
>> Core_Algorithms_ArrayMath.lib
>>         C:/scirun/SCIRun/bin/lib/Release/
>> Core_Algorithms_Converter.lib
>>         C:/scirun/SCIRun/bin/lib/Release/Core_Algorithms_DataIO.lib
>>         C:/scirun/SCIRun/bin/lib/Release/
>> Core_Algorithms_DataStreaming.lib
>>         C:/scirun/SCIRun/bin/lib/Release/Core_Algorithms_Fields.lib
>>         C:/scirun/SCIRun/bin/lib/Release/Core_Algorithms_Geometry.lib
>>         C:/scirun/SCIRun/bin/lib/Release/Core_Algorithms_Math.lib
>>         C:/scirun/SCIRun/bin/lib/Release/
>> Core_Algorithms_Regression.lib
>>         C:/scirun/SCIRun/bin/lib/Release/Core_Algorithms_Util.lib
>>         C:/scirun/SCIRun/bin/lib/Release/
>> Core_Algorithms_Visualization.lib
>>         C:/scirun/SCIRun/bin/lib/Release/Core_Basis.lib
>>         C:/scirun/SCIRun/bin/lib/Release/Core_Bundle.lib
>>         C:/scirun/SCIRun/bin/lib/Release/Core_Comm.lib
>>         C:/scirun/SCIRun/bin/lib/Release/Core_Containers.lib
>>         C:/scirun/SCIRun/bin/lib/Release/Core_Datatypes.lib
>>         C:/scirun/SCIRun/bin/lib/Release/Core_Events.lib
>>         C:/scirun/SCIRun/bin/lib/Release/Core_Exceptions.lib
>>         C:/scirun/SCIRun/bin/lib/Release/Core_Geom.lib
>>         C:/scirun/SCIRun/bin/lib/Release/Core_Geometry.lib
>>         C:/scirun/SCIRun/bin/lib/Release/Core_GeomInterface.lib
>>         C:/scirun/SCIRun/bin/lib/Release/Core_ICom.lib
>>         C:/scirun/SCIRun/bin/lib/Release/Core_ImportExport.lib
>>         C:/scirun/SCIRun/bin/lib/Release/Core_Init.lib
>>         C:/scirun/SCIRun/bin/lib/Release/Core_Malloc.lib
>>         C:/scirun/SCIRun/bin/lib/Release/Core_Math.lib
>>         C:/scirun/SCIRun/bin/lib/Release/Core_Matlab.lib
>>         C:/scirun/SCIRun/bin/lib/Release/Core_OS.lib
>>         C:/scirun/SCIRun/bin/lib/Release/Core_Persistent.lib
>>         C:/scirun/SCIRun/bin/lib/Release/Core_Services.lib
>>         C:/scirun/SCIRun/bin/lib/Release/Core_Skinner.lib
>>         C:/scirun/SCIRun/bin/lib/Release/Core_SystemCall.lib
>>         C:/scirun/SCIRun/bin/lib/Release/Core_Thread.lib
>>         C:/scirun/SCIRun/bin/lib/Release/Core_Util.lib
>>         C:/scirun/SCIRun/bin/lib/Release/Core_Volume.lib
>>         C:/scirun/SCIRun/bin/lib/Release/Core_XMLUtil.lib
>>         C:/scirun/SCIRun/bin/lib/Release/Dataflow_Comm.lib
>>         C:/scirun/SCIRun/bin/lib/Release/Dataflow_Constraints.lib
>>         C:/scirun/SCIRun/bin/lib/Release/Dataflow_GuiInterface.lib
>>         C:/scirun/SCIRun/bin/lib/Release/Dataflow_Modules_Bundle.lib
>>         C:/scirun/SCIRun/bin/lib/Release/
>> Dataflow_Modules_Converters.lib
>>         C:/scirun/SCIRun/bin/lib/Release/
>> Dataflow_Modules_DataArrayMath.lib
>>         C:/scirun/SCIRun/bin/lib/Release/Dataflow_Modules_DataIO.lib
>>         C:/scirun/SCIRun/bin/lib/Release/
>> Dataflow_Modules_Examples.lib
>>         C:/scirun/SCIRun/bin/lib/Release/Dataflow_Modules_Fields.lib
>>         C:/scirun/SCIRun/bin/lib/Release/Dataflow_Modules_Math.lib
>>         C:/scirun/SCIRun/bin/lib/Release/Dataflow_Modules_Render.lib
>>         C:/scirun/SCIRun/bin/lib/Release/Dataflow_Modules_String.lib
>>         C:/scirun/SCIRun/bin/lib/Release/Dataflow_Modules_Time.lib
>>         C:/scirun/SCIRun/bin/lib/Release/
>> Dataflow_Modules_Visualization.lib
>>         C:/scirun/SCIRun/bin/lib/Release/Dataflow_Network.lib
>>         C:/scirun/SCIRun/bin/lib/Release/Dataflow_TCLThread.lib
>>         C:/scirun/SCIRun/bin/lib/Release/Dataflow_TkExtensions.lib
>>         C:/scirun/SCIRun/bin/lib/Release/Dataflow_Widgets.lib
>>         C:/scirun/SCIRun/bin/lib/Release/
>> Packages_BioPSE_Core_Algorithms_Forward.lib
>>         C:/scirun/SCIRun/bin/lib/Release/
>> Packages_BioPSE_Core_Algorithms_NumApproximation.lib
>>         C:/scirun/SCIRun/bin/lib/Release/
>> Packages_BioPSE_Core_Datatypes.lib
>>         C:/scirun/SCIRun/bin/lib/Release/
>> Packages_BioPSE_Dataflow_Modules_DataIO.lib
>>         C:/scirun/SCIRun/bin/lib/Release/
>> Packages_BioPSE_Dataflow_Modules_Forward.lib
>>         C:/scirun/SCIRun/bin/lib/Release/
>> Packages_BioPSE_Dataflow_Modules_Inverse.lib
>>         C:/scirun/SCIRun/bin/lib/Release/
>> Packages_BioPSE_Dataflow_Modules_LeadField.lib
>>         C:/scirun/SCIRun/bin/lib/Release/
>> Packages_BioPSE_Dataflow_Modules_Modeling.lib
>>         C:/scirun/SCIRun/bin/lib/Release/
>> Packages_BioPSE_Dataflow_Modules_NeuroFEM.lib
>>         C:/scirun/SCIRun/bin/lib/Release/
>> Packages_BioPSE_Dataflow_Modules_Visualization.lib
>>         C:/scirun/SCIRun/bin/lib/Release/
>> Packages_MatlabInterface_Dataflow_Modules_DataIO.lib
>>         C:/scirun/SCIRun/bin/lib/Release/
>> Packages_MatlabInterface_Dataflow_Modules_Interface.lib
>>         C:/scirun/SCIRun/bin/lib/Release/
>> Packages_MatlabInterface_Services.lib
>>         C:/scirun/SCIRun/bin/lib/Release/
>> Packages_Teem_Dataflow_Modules_Converters.lib
>>         C:/scirun/SCIRun/bin/lib/Release/
>> Packages_Teem_Dataflow_Modules_DataIO.lib
>>         C:/scirun/SCIRun/bin/lib/Release/
>> Packages_Teem_Dataflow_Modules_Misc.lib
>>         C:/scirun/SCIRun/bin/lib/Release/
>> Packages_Teem_Dataflow_Modules_Tend.lib
>>         C:/scirun/SCIRun/bin/lib/Release/
>> Packages_Teem_Dataflow_Modules_Unu.lib
>>         C:/scirun/thirdparty/lib/blt.lib
>>         C:/scirun/thirdparty/lib/freetype.lib
>>         C:/scirun/thirdparty/lib/itcl.lib
>>         C:/scirun/thirdparty/lib/itclstubs32.lib
>>         C:/scirun/thirdparty/lib/itk.lib
>>         C:/scirun/thirdparty/lib/png.lib
>>         C:/scirun/thirdparty/lib/tcl.lib
>>         C:/scirun/thirdparty/lib/tclstub84.lib
>>         C:/scirun/thirdparty/lib/teem.lib
>>         C:/scirun/thirdparty/lib/tk.lib
>>         C:/scirun/thirdparty/lib/tkstub84.lib
>>         C:/scirun/thirdparty/lib/xml2.lib
>>         C:/scirun/thirdparty/lib/z.lib
>>         FldTMtlbAlgT.GFldTrSrfMhTrLnrLgnPtNDtBssdblvctrdbl.obj
>>            Creando biblioteca
>>         FldTMtlbAlgT.GFldTrSrfMhTrLnrLgnPtNDtBssdblvctrdbl.lib y
>>         objeto FldTMtlbAlgT.GFldTrSrfMhTrLnrLgnPtNDtBssdblvctrdbl.exp
>>         DynamicLoader - Successfully compiled
>>         FldTMtlbAlgT.GFldTrSrfMhTrLnrLgnPtNDtBssdblvctrdbl.dll
>>         REMARK: Dynamic compilation completed.
>>         ERROR: InterfaceWithMatlab: Could not read output matrix
>>
>> ---------------------------------------------------------------------
>> ----------
>>
>>         What can I do?
>>         Thanks,
>>              Lydia
>>
>> =====================================================================
>> ======
>>         == The SCIRun Users mailing list: send email to
>>         majordomo@sci.utah.edu   ==
>>         == for more details.
>>         ==
>>         == Please acknowledge use of SCIRun in your papers and
>>         reports:          ==
>>         ==   see
>>         http://software.sci.utah.edu/scirun-biopse_citation.bib
>>         ==
>>
>> =====================================================================
>> ======
>>
>
> ======================================================================
> =====
> == The SCIRun Users mailing list: send email to
> majordomo@sci.utah.edu   ==
> == for more
> details.                                                     ==
> == Please acknowledge use of SCIRun in your papers and
> reports:          ==
> ==   see http://software.sci.utah.edu/scirun-
> biopse_citation.bib         ==
> ======================================================================
> =====
>
>
> ======================================================================
> =====
> == The SCIRun Users mailing list: send email to
> majordomo@sci.utah.edu   ==
> == for more
> details.                                                     ==
> == Please acknowledge use of SCIRun in your papers and
> reports:          ==
> ==   see http://software.sci.utah.edu/scirun-
> biopse_citation.bib         ==
> ======================================================================
> =====

===========================================================================
== The SCIRun Users mailing list: send email to majordomo@sci.utah.edu   ==
== for more details.                                                     ==
== Please acknowledge use of SCIRun in your papers and reports:          ==
==   see http://software.sci.utah.edu/scirun-biopse_citation.bib         ==
===========================================================================