SCI Seg3D Mailing List

Text archives Help

[Seg3D] Export mask problem, documentation and wish list

Chronological Thread 
  • From: Sidnei Paciornik <>
  • To:
  • Subject: [Seg3D] Export mask problem, documentation and wish list
  • Date: Wed, 27 Jun 2012 23:30:28 -0300

Hi there,

I have mentioned this to Ayla, but I am not sure if there was a chance to check it.

When I export a mask as bmp's or tiff's, the images are scaled between zero and one and the segmented regions are invisible. 

Of course I can rescale the intensities in almost any IP program, but I think the images should be automatically scaled to 0-255 or, at least, allow this option.

One more point: where can I find an UP TO DATE doc about Seg3D2 functions? Many are pretty self evident, but some are not. Is there a wiki or complete help? I did find some tutorials, but they were incomplete and seemed outdated.

Having said that, I think Seg3D2 is just outstanding. It is powerful, fast and very easy to use. The interface is one of the best I have seen. I hope you can continue its development.

If you allow me a wish list:
- measurement of objects sizes and shapes with a data file output (I am aware of the connected component size function but I cannot figure how to extract the size measurements - all I could do was  segment the component size image based on size/greyscale).
- transparency control of isosurfaces in 3D view.


Prof. Sidnei Paciornik
Grupo de Análise de Imagens e Microscopia Digital - Image Analysis and Digital Microscopy Group
DEMa - Departamento de Engenharia de Materiais - Materials Engineering Department
PUC-Rio - Catholic University of Rio de Janeiro
Rua Marquês de São Vicente 225
Prédio Leme, Sala 501L
Gávea - Rio de Janeiro - RJ
22451-900 - Brasil
tel: (55)(21)3527-1243

  • [Seg3D] Export mask problem, documentation and wish list, Sidnei Paciornik, 06/27/2012

Archive powered by MHonArc 2.6.16.

Top of page