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[Seg3D] Broken build on Ubuntu 13.04


Chronological Thread 
  • From: Ramón Casero Cañas <rcasero@gmail.com>
  • To: "seg3d@sci.utah.edu" <seg3d@sci.utah.edu>
  • Subject: [Seg3D] Broken build on Ubuntu 13.04
  • Date: Tue, 28 May 2013 12:10:49 +0100
Hi,

I have just updated to the latest Seg3D2 code in


and got a couple of build errors easy to fix (see attached patch). But the build has hit another compilation error that seems trickier

[ 86%] Built target Application_LayerIO
[ 86%] [ 86%] [ 86%] [ 86%] Building CXX object Application/Filters/CMakeFiles/Application_Filters.dir/Actions/ActionAndFilter.cc.o
[ 86%] Building CXX object Application/Filters/CMakeFiles/Application_Filters.dir/Actions/ActionOrFilter.cc.o
Building CXX object Application/Filters/CMakeFiles/Application_Filters.dir/Actions/ActionRemoveFilter.cc.o
[ 86%] Building CXX object Application/Filters/CMakeFiles/Application_Filters.dir/Actions/ActionXorFilter.cc.o
Building CXX object Application/Filters/CMakeFiles/Application_Filters.dir/Actions/ActionThresholdSegmentationLSFilter.cc.o
Building CXX object Application/Filters/CMakeFiles/Application_Filters.dir/Actions/ActionThreshold.cc.o
/home/rcasero/Documents/seg3d.2.1/src/Application/Filters/Actions/ActionOrFilter.cc: In member function ‘virtual void Seg3D::OrFilterAlgo::run_filter()’:
/home/rcasero/Documents/seg3d.2.1/src/Application/Filters/Actions/ActionOrFilter.cc:149:39: error: no matching function for call to ‘boost::shared_lock<boost::shared_mutex>::swap(Core::MaskDataBlock::shared_lock_type)’
/home/rcasero/Documents/seg3d.2.1/src/Application/Filters/Actions/ActionOrFilter.cc:149:39: note: candidate is:
/home/rcasero/Documents/seg3d.2.1/src/Externals/boost/boost/thread/lock_types.hpp:606:10: note: void boost::shared_lock<Mutex>::swap(boost::shared_lock<Mutex>&) [with Mutex = boost::shared_mutex, boost::shared_lock<Mutex> = boost::shared_lock<boost::shared_mutex>]
/home/rcasero/Documents/seg3d.2.1/src/Externals/boost/boost/thread/lock_types.hpp:606:10: note:   no known conversion for argument 1 from ‘Core::MaskDataBlock::shared_lock_type {aka boost::shared_lock<boost::shared_mutex>}’ to ‘boost::shared_lock<boost::shared_mutex>&’
/home/rcasero/Documents/seg3d.2.1/src/Application/Filters/Actions/ActionOrFilter.cc:155:39: error: no matching function for call to ‘boost::shared_lock<boost::shared_mutex>::swap(Core::MaskDataBlock::shared_lock_type)’
/home/rcasero/Documents/seg3d.2.1/src/Application/Filters/Actions/ActionOrFilter.cc:155:39: note: candidate is:
/home/rcasero/Documents/seg3d.2.1/src/Externals/boost/boost/thread/lock_types.hpp:606:10: note: void boost::shared_lock<Mutex>::swap(boost::shared_lock<Mutex>&) [with Mutex = boost::shared_mutex, boost::shared_lock<Mutex> = boost::shared_lock<boost::shared_mutex>]
/home/rcasero/Documents/seg3d.2.1/src/Externals/boost/boost/thread/lock_types.hpp:606:10: note:   no known conversion for argument 1 from ‘Core::MaskDataBlock::shared_lock_type {aka boost::shared_lock<boost::shared_mutex>}’ to ‘boost::shared_lock<boost::shared_mutex>&’
/home/rcasero/Documents/seg3d.2.1/src/Application/Filters/Actions/ActionAndFilter.cc: In member function ‘virtual void Seg3D::AndFilterAlgo::run_filter()’:
/home/rcasero/Documents/seg3d.2.1/src/Application/Filters/Actions/ActionAndFilter.cc:149:39: error: no matching function for call to ‘boost::shared_lock<boost::shared_mutex>::swap(Core::MaskDataBlock::shared_lock_type)’
/home/rcasero/Documents/seg3d.2.1/src/Application/Filters/Actions/ActionAndFilter.cc:149:39: note: candidate is:
/home/rcasero/Documents/seg3d.2.1/src/Externals/boost/boost/thread/lock_types.hpp:606:10: note: void boost::shared_lock<Mutex>::swap(boost::shared_lock<Mutex>&) [with Mutex = boost::shared_mutex, boost::shared_lock<Mutex> = boost::shared_lock<boost::shared_mutex>]
/home/rcasero/Documents/seg3d.2.1/src/Externals/boost/boost/thread/lock_types.hpp:606:10: note:   no known conversion for argument 1 from ‘Core::MaskDataBlock::shared_lock_type {aka boost::shared_lock<boost::shared_mutex>}’ to ‘boost::shared_lock<boost::shared_mutex>&’
/home/rcasero/Documents/seg3d.2.1/src/Application/Filters/Actions/ActionAndFilter.cc:155:39: error: no matching function for call to ‘boost::shared_lock<boost::shared_mutex>::swap(Core::MaskDataBlock::shared_lock_type)’
/home/rcasero/Documents/seg3d.2.1/src/Application/Filters/Actions/ActionAndFilter.cc:155:39: note: candidate is:
/home/rcasero/Documents/seg3d.2.1/src/Externals/boost/boost/thread/lock_types.hpp:606:10: note: void boost::shared_lock<Mutex>::swap(boost::shared_lock<Mutex>&) [with Mutex = boost::shared_mutex, boost::shared_lock<Mutex> = boost::shared_lock<boost::shared_mutex>]
/home/rcasero/Documents/seg3d.2.1/src/Externals/boost/boost/thread/lock_types.hpp:606:10: note:   no known conversion for argument 1 from ‘Core::MaskDataBlock::shared_lock_type {aka boost::shared_lock<boost::shared_mutex>}’ to ‘boost::shared_lock<boost::shared_mutex>&’
/home/rcasero/Documents/seg3d.2.1/src/Application/Filters/Actions/ActionRemoveFilter.cc: In member function ‘virtual void Seg3D::RemoveFilterAlgo::run_filter()’:
/home/rcasero/Documents/seg3d.2.1/src/Application/Filters/Actions/ActionRemoveFilter.cc:155:39: error: no matching function for call to ‘boost::shared_lock<boost::shared_mutex>::swap(Core::MaskDataBlock::shared_lock_type)’
/home/rcasero/Documents/seg3d.2.1/src/Application/Filters/Actions/ActionRemoveFilter.cc:155:39: note: candidate is:
/home/rcasero/Documents/seg3d.2.1/src/Externals/boost/boost/thread/lock_types.hpp:606:10: note: void boost::shared_lock<Mutex>::swap(boost::shared_lock<Mutex>&) [with Mutex = boost::shared_mutex, boost::shared_lock<Mutex> = boost::shared_lock<boost::shared_mutex>]
/home/rcasero/Documents/seg3d.2.1/src/Externals/boost/boost/thread/lock_types.hpp:606:10: note:   no known conversion for argument 1 from ‘Core::MaskDataBlock::shared_lock_type {aka boost::shared_lock<boost::shared_mutex>}’ to ‘boost::shared_lock<boost::shared_mutex>&’
/home/rcasero/Documents/seg3d.2.1/src/Application/Filters/Actions/ActionRemoveFilter.cc:161:39: error: no matching function for call to ‘boost::shared_lock<boost::shared_mutex>::swap(Core::MaskDataBlock::shared_lock_type)’
/home/rcasero/Documents/seg3d.2.1/src/Application/Filters/Actions/ActionRemoveFilter.cc:161:39: note: candidate is:
/home/rcasero/Documents/seg3d.2.1/src/Externals/boost/boost/thread/lock_types.hpp:606:10: note: void boost::shared_lock<Mutex>::swap(boost::shared_lock<Mutex>&) [with Mutex = boost::shared_mutex, boost::shared_lock<Mutex> = boost::shared_lock<boost::shared_mutex>]
/home/rcasero/Documents/seg3d.2.1/src/Externals/boost/boost/thread/lock_types.hpp:606:10: note:   no known conversion for argument 1 from ‘Core::MaskDataBlock::shared_lock_type {aka boost::shared_lock<boost::shared_mutex>}’ to ‘boost::shared_lock<boost::shared_mutex>&’
make[2]: *** [Application/Filters/CMakeFiles/Application_Filters.dir/Actions/ActionOrFilter.cc.o] Error 1
make[2]: *** Waiting for unfinished jobs....
/home/rcasero/Documents/seg3d.2.1/src/Application/Filters/Actions/ActionXorFilter.cc: In member function ‘virtual void Seg3D::XorFilterAlgo::run_filter()’:
/home/rcasero/Documents/seg3d.2.1/src/Application/Filters/Actions/ActionXorFilter.cc:149:39: error: no matching function for call to ‘boost::shared_lock<boost::shared_mutex>::swap(Core::MaskDataBlock::shared_lock_type)’
/home/rcasero/Documents/seg3d.2.1/src/Application/Filters/Actions/ActionXorFilter.cc:149:39: note: candidate is:
/home/rcasero/Documents/seg3d.2.1/src/Externals/boost/boost/thread/lock_types.hpp:606:10: note: void boost::shared_lock<Mutex>::swap(boost::shared_lock<Mutex>&) [with Mutex = boost::shared_mutex, boost::shared_lock<Mutex> = boost::shared_lock<boost::shared_mutex>]
/home/rcasero/Documents/seg3d.2.1/src/Externals/boost/boost/thread/lock_types.hpp:606:10: note:   no known conversion for argument 1 from ‘Core::MaskDataBlock::shared_lock_type {aka boost::shared_lock<boost::shared_mutex>}’ to ‘boost::shared_lock<boost::shared_mutex>&’
/home/rcasero/Documents/seg3d.2.1/src/Application/Filters/Actions/ActionXorFilter.cc:155:39: error: no matching function for call to ‘boost::shared_lock<boost::shared_mutex>::swap(Core::MaskDataBlock::shared_lock_type)’
/home/rcasero/Documents/seg3d.2.1/src/Application/Filters/Actions/ActionXorFilter.cc:155:39: note: candidate is:
/home/rcasero/Documents/seg3d.2.1/src/Externals/boost/boost/thread/lock_types.hpp:606:10: note: void boost::shared_lock<Mutex>::swap(boost::shared_lock<Mutex>&) [with Mutex = boost::shared_mutex, boost::shared_lock<Mutex> = boost::shared_lock<boost::shared_mutex>]
/home/rcasero/Documents/seg3d.2.1/src/Externals/boost/boost/thread/lock_types.hpp:606:10: note:   no known conversion for argument 1 from ‘Core::MaskDataBlock::shared_lock_type {aka boost::shared_lock<boost::shared_mutex>}’ to ‘boost::shared_lock<boost::shared_mutex>&’
make[2]: *** [Application/Filters/CMakeFiles/Application_Filters.dir/Actions/ActionAndFilter.cc.o] Error 1
make[2]: *** [Application/Filters/CMakeFiles/Application_Filters.dir/Actions/ActionRemoveFilter.cc.o] Error 1
make[2]: *** [Application/Filters/CMakeFiles/Application_Filters.dir/Actions/ActionXorFilter.cc.o] Error 1
make[1]: *** [Application/Filters/CMakeFiles/Application_Filters.dir/all] Error 2
make: *** [all] Error 2

Best regards,

Ramon.


--
Dr. Ramón Casero Cañas

Oxford e-Research Centre (OeRC)
University of Oxford
7 Keble Rd
Oxford OX1 3QG

tlf     +44 (0) 1865 610739
web     http://www.cs.ox.ac.uk/people/Ramon.CaseroCanas
photos  http://www.flickr.com/photos/rcasero/

Attachment: fix-build-errors.diff
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