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[Seg3D] Re: seg3D export layer


Chronological Thread 
  • From: Ayla Khan <ayla@sci.utah.edu>
  • To: seg3d@sci.utah.edu
  • Subject: [Seg3D] Re: seg3D export layer
  • Date: Tue, 28 May 2013 17:09:58 -0600
Hi Lorenzo,

Can you send me an example of your data? The Matlab file export problem was fixed in the 2.1.5 release candidate (bug report #815), and exporting the NRRD format should generate appropriate NRRD001 style header entries.

Ayla

On May 27, 2013, at 11:56 AM, Lorenzo Grassi wrote:

Hi,

I successfully used Seg3D 2.1 (compiled on Kubuntu 13.04) to segment a geometry from a CT scan (imported as a structured points VTK structure).
However, when I exported the obtained mask, both the *.nrrd file and the *.mat file did not contain any information about the position and/or voxel spacing (scirunnrd.axis=[]).

The orientation and dimensions of the CT volume are correctly read by Seg3D.

I tried to do the same export operation with the Windows version of Seg3D, but I got the same problem.

How can I solve this issue?

Best regards,
Lorenzo


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