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Hi Allen,

Could you please tell me what compiler and version you're building with?

Thanks,

Ayla

On Jul 20, 2015, at 3:32 PM, Elizabeth Jurrus wrote:

> Sharing with the seg3d mailing
>
> - liz
>
>
> On 7/20/15 2:20 PM, Allen Rueter wrote:
>>
>> Date: Mon, 20 Jul 2015 16:14:17 -0500
>> From: Allen Rueter <allen@seas.wustl.edu>
>> To: seg3d@sci.utah.edu
>> Subject: problem building Seg3D-2.2.1 CentOS 7.1
>> User-Agent: Mutt/1.5.23 (2014-03-12)
>>
>> Hi,
>> we seem to have problem building Seg3D-2.2.1 on CentOS 7.1
>>
>> # cat /etc/redhat-release
>> CentOS Linux release 7.1.1503 (Core)
>>
>> bin# yum list qt
>> Loaded plugins: auto-update-debuginfo, fastestmirror, langpacks, priorities
>> Loading mirror speeds from cached hostfile
>> * base: mirror.metrocast.net
>> * epel: mirror.nexcess.net
>> * epel-debuginfo: mirror.nexcess.net
>> * extras: mirrors.chkhosting.com
>> * updates: mirror.us.leaseweb.net
>> Installed Packages
>> qt.x86_64 1:4.8.5-8.el7
>> @anaconda
>>
>> bin# cmake --version
>> cmake version 2.8.11
>>
>> bin# cmake ../Superbuild
>> -- QTVERSION=4.8.5
>> -- Found use file: /usr/share/cmake/Modules/UseQt4.cmake
>> -- Zlib_DIR: /usr/local/src/Seg3D-2.2.1/bin/Externals/Build/Zlib_external
>> -- Glew_DIR: /usr/local/src/Seg3D-2.2.1/bin/Externals/Build/Glew_external
>> -- Freetype_DIR:
>> /usr/local/src/Seg3D-2.2.1/bin/Externals/Build/Freetype_external
>> -- SQLite_DIR:
>> /usr/local/src/Seg3D-2.2.1/bin/Externals/Build/SQLite_external
>> -- LibPNG_DIR:
>> /usr/local/src/Seg3D-2.2.1/bin/Externals/Build/LibPNG_external
>> -- Python_DIR:
>> /usr/local/src/Seg3D-2.2.1/bin/Externals/Install/Python_external
>> -- ITK_DIR=/usr/local/src/Seg3D-2.2.1/bin/Externals/Build/ITK_external
>> -- Boost_DIR:
>> /usr/local/src/Seg3D-2.2.1/bin/Externals/Install/Boost_external
>> -- Teem_DIR: /usr/local/src/Seg3D-2.2.1/bin/Externals/Build/Teem_external
>> -- ImplicitFunction_DIR:
>> /usr/local/src/Seg3D-2.2.1/bin/Externals/Build/ImplicitFunction_external
>> -- Configuring done
>> -- Generating done
>> -- Build files have been written to: /usr/local/src/Seg3D-2.2.1/bin
>>
>> # cd ..
>>
>> # ./build.sh
>> ... about an hour later.
>>
>> Linking CXX executable ../Seg3D2
>> /usr/local/src/Seg3D-2.2.1/bin/Externals/Source/Boost_external/lib/libboost_python-mt.a(builtin_converters.o):
>> In function `boost::python::converter::(anonymous
>> namespace)::signed_int_rvalue_from_python_base::get_pytype()':
>> builtin_converters.cpp:(.text+0x13): undefined reference to `PyInt_Type'
>> ...
>>
>> function_doc_signature.cpp:(.text+0xfc6): undefined reference to
>> `PyInt_FromLong'
>> function_doc_signature.cpp:(.text+0x1121): undefined reference to
>> `PyInt_FromLong'
>> /usr/local/src/Seg3D-2.2.1/bin/Externals/Source/Boost_external/lib/libboost_python-mt.a(function_doc_signature.o):function_doc_signature.cpp:(.text+0x118f):
>> more undefined references to `PyInt_FromLong' follow
>> /usr/local/src/Seg3D-2.2.1/bin/Externals/Source/Boost_external/lib/libboost_python-mt.a(function_doc_signature.o):
>> In function `boost::python::tuple
>> boost::python::make_tuple<boost::python::str, boost::python::api::object,
>> boost::python::str, boost::python::str, boost::python::str,
>> std::string>(boost::python::str const&, boost::python::api::object const&,
>> boost::python::str const&, boost::python::str const&, boost::python::str
>> const&, std::string const&)':
>> function_doc_signature.cpp:(.text._ZN5boost6python10make_tupleINS0_3strENS0_3api6objectES2_S2_S2_SsEENS0_5tupleERKT_RKT0_RKT1_RKT2_RKT3_RKT4_[_ZN5boost6python10make_tupleINS0_3strENS0_3api6objectES2_S2_S2_SsEENS0_5tupleERKT_RKT0_RKT1_RKT2_RKT3_RKT4_]+0xd2):
>> undefined reference to `PyString_FromStringAndSize'
>> /usr/local/src/Seg3D-2.2.1/bin/Externals/Source/Boost_external/lib/libboost_python-mt.a(function_doc_signature.o):
>> In function `boost::python::tuple
>> boost::python::make_tuple<boost::python::api::object, boost::python::str,
>> boost::python::str, boost::python::str, std::string,
>> boost::python::str>(boost::python::api::object const&, boost::python::str
>> const&, boost::python::str const&, boost::python::str const&, std::string
>> const&, boost::python::str const&)':
>> function_doc_signature.cpp:(.text._ZN5boost6python10make_tupleINS0_3api6objectENS0_3strES4_S4_SsS4_EENS0_5tupleERKT_RKT0_RKT1_RKT2_RKT3_RKT4_[_ZN5boost6python10make_tupleINS0_3api6objectENS0_3strES4_S4_SsS4_EENS0_5tupleERKT_RKT0_RKT1_RKT2_RKT3_RKT4_]+0xb2):
>> undefined reference to `PyString_FromStringAndSize'
>> /usr/local/src/Seg3D-2.2.1/bin/Externals/Source/Boost_external/lib/libboost_python-mt.a(registry.o):
>> In function `boost::python::converter::registration::to_python(void const
>> volatile*) const':
>> registry.cpp:(.text+0x215): undefined reference to `PyString_FromFormat'
>> collect2: error: ld returned 1 exit status
>> make[5]: *** [Seg3D2] Error 1
>> make[4]: *** [Main/CMakeFiles/Seg3D2.dir/all] Error 2
>> make[3]: *** [all] Error 2
>> make[2]: *** [Externals/Stamp/Seg3D_external/Seg3D_external-build] Error 2
>> make[1]: *** [CMakeFiles/Seg3D_external.dir/all] Error 2
>> make: *** [all] Error 2
>> Building Seg3D returned an error
>>
>> Either the code failed to build properly or
>>
>> the testing programs failed to complete without
>>
>> every single test program passing the test.
>>
>> #
>>
>> thanks
>>
>

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• Re: [Seg3D] seg3d, I'd like to submit a build problem, Elizabeth Jurrus, 07/20/2015
  • Re: [Seg3D] seg3d, I'd like to submit a build problem, Ayla Khan, 07/20/2015
    • Message not available
      • Re: [Seg3D] seg3d, I'd like to submit a build problem, Ayla Khan, 07/21/2015

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