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Hi Ayla,
$ gcc --version
gcc (GCC) 4.8.3 20140911 (Red Hat 4.8.3-9)
g++ --version
g++ (GCC) 4.8.3 20140911 (Red Hat 4.8.3-9)

thanks

Allen

On Mon, Jul 20, 2015 at 03:39:39PM -0600, Ayla Khan wrote:
> Hi Allen,
>
> Could you please tell me what compiler and version you're building with?
>
> Thanks,
>
> Ayla
>
> On Jul 20, 2015, at 3:32 PM, Elizabeth Jurrus wrote:
>
> > Sharing with the seg3d mailing
> >
> > - liz
> >
> >
> > On 7/20/15 2:20 PM, Allen Rueter wrote:
> >>
> >> Date: Mon, 20 Jul 2015 16:14:17 -0500
> >> From: Allen Rueter <allen@seas.wustl.edu>
> >> To: seg3d@sci.utah.edu
> >> Subject: problem building Seg3D-2.2.1 CentOS 7.1
> >> User-Agent: Mutt/1.5.23 (2014-03-12)
> >>
> >> Hi,
> >> we seem to have problem building Seg3D-2.2.1 on CentOS 7.1
> >>
> >> # cat /etc/redhat-release
> >> CentOS Linux release 7.1.1503 (Core)
> >>
> >> bin# yum list qt
> >> Loaded plugins: auto-update-debuginfo, fastestmirror, langpacks,
> >> priorities
> >> Loading mirror speeds from cached hostfile
> >> * base: mirror.metrocast.net
> >> * epel: mirror.nexcess.net
> >> * epel-debuginfo: mirror.nexcess.net
> >> * extras: mirrors.chkhosting.com
> >> * updates: mirror.us.leaseweb.net
> >> Installed Packages
> >> qt.x86_64 1:4.8.5-8.el7
> >> @anaconda
> >>
> >> bin# cmake --version
> >> cmake version 2.8.11
> >>
> >> bin# cmake ../Superbuild
> >> -- QTVERSION=4.8.5
> >> -- Found use file: /usr/share/cmake/Modules/UseQt4.cmake
> >> -- Zlib_DIR: /usr/local/src/Seg3D-2.2.1/bin/Externals/Build/Zlib_external
> >> -- Glew_DIR: /usr/local/src/Seg3D-2.2.1/bin/Externals/Build/Glew_external
> >> -- Freetype_DIR:
> >> /usr/local/src/Seg3D-2.2.1/bin/Externals/Build/Freetype_external
> >> -- SQLite_DIR:
> >> /usr/local/src/Seg3D-2.2.1/bin/Externals/Build/SQLite_external
> >> -- LibPNG_DIR:
> >> /usr/local/src/Seg3D-2.2.1/bin/Externals/Build/LibPNG_external
> >> -- Python_DIR:
> >> /usr/local/src/Seg3D-2.2.1/bin/Externals/Install/Python_external
> >> -- ITK_DIR=/usr/local/src/Seg3D-2.2.1/bin/Externals/Build/ITK_external
> >> -- Boost_DIR:
> >> /usr/local/src/Seg3D-2.2.1/bin/Externals/Install/Boost_external
> >> -- Teem_DIR: /usr/local/src/Seg3D-2.2.1/bin/Externals/Build/Teem_external
> >> -- ImplicitFunction_DIR:
> >> /usr/local/src/Seg3D-2.2.1/bin/Externals/Build/ImplicitFunction_external
> >> -- Configuring done
> >> -- Generating done
> >> -- Build files have been written to: /usr/local/src/Seg3D-2.2.1/bin
> >>
> >> # cd ..
> >>
> >> # ./build.sh
> >> ... about an hour later.
> >>
> >> Linking CXX executable ../Seg3D2
> >> /usr/local/src/Seg3D-2.2.1/bin/Externals/Source/Boost_external/lib/libboost_python-mt.a(builtin_converters.o):
> >> In function `boost::python::converter::(anonymous
> >> namespace)::signed_int_rvalue_from_python_base::get_pytype()':
> >> builtin_converters.cpp:(.text+0x13): undefined reference to `PyInt_Type'
> >> ...
> >>
> >> function_doc_signature.cpp:(.text+0xfc6): undefined reference to
> >> `PyInt_FromLong'
> >> function_doc_signature.cpp:(.text+0x1121): undefined reference to
> >> `PyInt_FromLong'
> >> /usr/local/src/Seg3D-2.2.1/bin/Externals/Source/Boost_external/lib/libboost_python-mt.a(function_doc_signature.o):function_doc_signature.cpp:(.text+0x118f):
> >> more undefined references to `PyInt_FromLong' follow
> >> /usr/local/src/Seg3D-2.2.1/bin/Externals/Source/Boost_external/lib/libboost_python-mt.a(function_doc_signature.o):
> >> In function `boost::python::tuple
> >> boost::python::make_tuple<boost::python::str,
> >> boost::python::api::object, boost::python::str, boost::python::str,
> >> boost::python::str, std::string>(boost::python::str const&,
> >> boost::python::api::object const&, boost::python::str const&,
> >> boost::python::str const&, boost::python::str const&, std::string
> >> const&)':
> >> function_doc_signature.cpp:(.text._ZN5boost6python10make_tupleINS0_3strENS0_3api6objectES2_S2_S2_SsEENS0_5tupleERKT_RKT0_RKT1_RKT2_RKT3_RKT4_[_ZN5boost6python10make_tupleINS0_3strENS0_3api6objectES2_S2_S2_SsEENS0_5tupleERKT_RKT0_RKT1_RKT2_RKT3_RKT4_]+0xd2):
> >> undefined reference to `PyString_FromStringAndSize'
> >> /usr/local/src/Seg3D-2.2.1/bin/Externals/Source/Boost_external/lib/libboost_python-mt.a(function_doc_signature.o):
> >> In function `boost::python::tuple
> >> boost::python::make_tuple<boost::python::api::object,
> >> boost::python::str, boost::python::str, boost::python::str, std::string,
> >> boost::python::str>(boost::python::api::object const&,
> >> boost::python::str const&, boost::python::str const&, boost::python::str
> >> const&, std::string const&, boost::python::str const&)':
> >> function_doc_signature.cpp:(.text._ZN5boost6python10make_tupleINS0_3api6objectENS0_3strES4_S4_SsS4_EENS0_5tupleERKT_RKT0_RKT1_RKT2_RKT3_RKT4_[_ZN5boost6python10make_tupleINS0_3api6objectENS0_3strES4_S4_SsS4_EENS0_5tupleERKT_RKT0_RKT1_RKT2_RKT3_RKT4_]+0xb2):
> >> undefined reference to `PyString_FromStringAndSize'
> >> /usr/local/src/Seg3D-2.2.1/bin/Externals/Source/Boost_external/lib/libboost_python-mt.a(registry.o):
> >> In function `boost::python::converter::registration::to_python(void
> >> const volatile*) const':
> >> registry.cpp:(.text+0x215): undefined reference to `PyString_FromFormat'
> >> collect2: error: ld returned 1 exit status
> >> make[5]: *** [Seg3D2] Error 1
> >> make[4]: *** [Main/CMakeFiles/Seg3D2.dir/all] Error 2
> >> make[3]: *** [all] Error 2
> >> make[2]: *** [Externals/Stamp/Seg3D_external/Seg3D_external-build] Error
> >> 2
> >> make[1]: *** [CMakeFiles/Seg3D_external.dir/all] Error 2
> >> make: *** [all] Error 2
> >> Building Seg3D returned an error
> >>
> >> Either the code failed to build properly or
> >>
> >> the testing programs failed to complete without
> >>
> >> every single test program passing the test.
> >>
> >> #
> >>
> >> thanks
> >>
> >
>

--
I can help with research support (matlab/clusters/fluent/comsol/NI Labview),
linux, networking, security issues.
--
Allen P. Rueter 314/935-6429 Fx:314/935-4343
Sr. Systems Spc. in EIT allen@seas.wustl.edu
Camp Box 1207 Lopata Rm 406 ____ ___ ___
Washington University | __|_ _|_ _|
One Brookings Dr. | *_| |*| |*|
St. Louis MO 63130 |____|___||_|
Office: 406E Lopata
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• Re: [Seg3D] seg3d, I'd like to submit a build problem (CentOS), Allen Rueter, 07/21/2015

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