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Thank you Allen - I'll work on reproducing the build error.

Ayla

On Jul 21, 2015, at 7:43 AM, Allen Rueter wrote:

> Hi Ayla,
> $ gcc --version
> gcc (GCC) 4.8.3 20140911 (Red Hat 4.8.3-9)
> g++ --version
> g++ (GCC) 4.8.3 20140911 (Red Hat 4.8.3-9)
>
> thanks
>
> Allen
>
> On Mon, Jul 20, 2015 at 03:39:39PM -0600, Ayla Khan wrote:
>> Hi Allen,
>>
>> Could you please tell me what compiler and version you're building with?
>>
>> Thanks,
>>
>> Ayla
>>
>> On Jul 20, 2015, at 3:32 PM, Elizabeth Jurrus wrote:
>>
>>> Sharing with the seg3d mailing
>>>
>>> - liz
>>>
>>>
>>> On 7/20/15 2:20 PM, Allen Rueter wrote:
>>>>
>>>> Date: Mon, 20 Jul 2015 16:14:17 -0500
>>>> From: Allen Rueter <allen@seas.wustl.edu>
>>>> To: seg3d@sci.utah.edu
>>>> Subject: problem building Seg3D-2.2.1 CentOS 7.1
>>>> User-Agent: Mutt/1.5.23 (2014-03-12)
>>>>
>>>> Hi,
>>>> we seem to have problem building Seg3D-2.2.1 on CentOS 7.1
>>>>
>>>> # cat /etc/redhat-release
>>>> CentOS Linux release 7.1.1503 (Core)
>>>>
>>>> bin# yum list qt
>>>> Loaded plugins: auto-update-debuginfo, fastestmirror, langpacks,
>>>> priorities
>>>> Loading mirror speeds from cached hostfile
>>>> * base: mirror.metrocast.net
>>>> * epel: mirror.nexcess.net
>>>> * epel-debuginfo: mirror.nexcess.net
>>>> * extras: mirrors.chkhosting.com
>>>> * updates: mirror.us.leaseweb.net
>>>> Installed Packages
>>>> qt.x86_64 1:4.8.5-8.el7
>>>> @anaconda
>>>>
>>>> bin# cmake --version
>>>> cmake version 2.8.11
>>>>
>>>> bin# cmake ../Superbuild
>>>> -- QTVERSION=4.8.5
>>>> -- Found use file: /usr/share/cmake/Modules/UseQt4.cmake
>>>> -- Zlib_DIR: /usr/local/src/Seg3D-2.2.1/bin/Externals/Build/Zlib_external
>>>> -- Glew_DIR: /usr/local/src/Seg3D-2.2.1/bin/Externals/Build/Glew_external
>>>> -- Freetype_DIR:
>>>> /usr/local/src/Seg3D-2.2.1/bin/Externals/Build/Freetype_external
>>>> -- SQLite_DIR:
>>>> /usr/local/src/Seg3D-2.2.1/bin/Externals/Build/SQLite_external
>>>> -- LibPNG_DIR:
>>>> /usr/local/src/Seg3D-2.2.1/bin/Externals/Build/LibPNG_external
>>>> -- Python_DIR:
>>>> /usr/local/src/Seg3D-2.2.1/bin/Externals/Install/Python_external
>>>> -- ITK_DIR=/usr/local/src/Seg3D-2.2.1/bin/Externals/Build/ITK_external
>>>> -- Boost_DIR:
>>>> /usr/local/src/Seg3D-2.2.1/bin/Externals/Install/Boost_external
>>>> -- Teem_DIR: /usr/local/src/Seg3D-2.2.1/bin/Externals/Build/Teem_external
>>>> -- ImplicitFunction_DIR:
>>>> /usr/local/src/Seg3D-2.2.1/bin/Externals/Build/ImplicitFunction_external
>>>> -- Configuring done
>>>> -- Generating done
>>>> -- Build files have been written to: /usr/local/src/Seg3D-2.2.1/bin
>>>>
>>>> # cd ..
>>>>
>>>> # ./build.sh
>>>> ... about an hour later.
>>>>
>>>> Linking CXX executable ../Seg3D2
>>>> /usr/local/src/Seg3D-2.2.1/bin/Externals/Source/Boost_external/lib/libboost_python-mt.a(builtin_converters.o):
>>>> In function `boost::python::converter::(anonymous
>>>> namespace)::signed_int_rvalue_from_python_base::get_pytype()':
>>>> builtin_converters.cpp:(.text+0x13): undefined reference to `PyInt_Type'
>>>> ...
>>>>
>>>> function_doc_signature.cpp:(.text+0xfc6): undefined reference to
>>>> `PyInt_FromLong'
>>>> function_doc_signature.cpp:(.text+0x1121): undefined reference to
>>>> `PyInt_FromLong'
>>>> /usr/local/src/Seg3D-2.2.1/bin/Externals/Source/Boost_external/lib/libboost_python-mt.a(function_doc_signature.o):function_doc_signature.cpp:(.text+0x118f):
>>>> more undefined references to `PyInt_FromLong' follow
>>>> /usr/local/src/Seg3D-2.2.1/bin/Externals/Source/Boost_external/lib/libboost_python-mt.a(function_doc_signature.o):
>>>> In function `boost::python::tuple
>>>> boost::python::make_tuple<boost::python::str,
>>>> boost::python::api::object, boost::python::str, boost::python::str,
>>>> boost::python::str, std::string>(boost::python::str const&,
>>>> boost::python::api::object const&, boost::python::str const&,
>>>> boost::python::str const&, boost::python::str const&, std::string
>>>> const&)':
>>>> function_doc_signature.cpp:(.text._ZN5boost6python10make_tupleINS0_3strENS0_3api6objectES2_S2_S2_SsEENS0_5tupleERKT_RKT0_RKT1_RKT2_RKT3_RKT4_[_ZN5boost6python10make_tupleINS0_3strENS0_3api6objectES2_S2_S2_SsEENS0_5tupleERKT_RKT0_RKT1_RKT2_RKT3_RKT4_]+0xd2):
>>>> undefined reference to `PyString_FromStringAndSize'
>>>> /usr/local/src/Seg3D-2.2.1/bin/Externals/Source/Boost_external/lib/libboost_python-mt.a(function_doc_signature.o):
>>>> In function `boost::python::tuple
>>>> boost::python::make_tuple<boost::python::api::object,
>>>> boost::python::str, boost::python::str, boost::python::str, std::string,
>>>> boost::python::str>(boost::python::api::object const&,
>>>> boost::python::str const&, boost::python::str const&, boost::python::str
>>>> const&, std::string const&, boost::python::str const&)':
>>>> function_doc_signature.cpp:(.text._ZN5boost6python10make_tupleINS0_3api6objectENS0_3strES4_S4_SsS4_EENS0_5tupleERKT_RKT0_RKT1_RKT2_RKT3_RKT4_[_ZN5boost6python10make_tupleINS0_3api6objectENS0_3strES4_S4_SsS4_EENS0_5tupleERKT_RKT0_RKT1_RKT2_RKT3_RKT4_]+0xb2):
>>>> undefined reference to `PyString_FromStringAndSize'
>>>> /usr/local/src/Seg3D-2.2.1/bin/Externals/Source/Boost_external/lib/libboost_python-mt.a(registry.o):
>>>> In function `boost::python::converter::registration::to_python(void
>>>> const volatile*) const':
>>>> registry.cpp:(.text+0x215): undefined reference to `PyString_FromFormat'
>>>> collect2: error: ld returned 1 exit status
>>>> make[5]: *** [Seg3D2] Error 1
>>>> make[4]: *** [Main/CMakeFiles/Seg3D2.dir/all] Error 2
>>>> make[3]: *** [all] Error 2
>>>> make[2]: *** [Externals/Stamp/Seg3D_external/Seg3D_external-build] Error
>>>> 2
>>>> make[1]: *** [CMakeFiles/Seg3D_external.dir/all] Error 2
>>>> make: *** [all] Error 2
>>>> Building Seg3D returned an error
>>>>
>>>> Either the code failed to build properly or
>>>>
>>>> the testing programs failed to complete without
>>>>
>>>> every single test program passing the test.
>>>>
>>>> #
>>>>
>>>> thanks
>>>>
>>>
>>
>
> --
> I can help with research support (matlab/clusters/fluent/comsol/NI
> Labview),
> linux, networking, security issues.
> --
> Allen P. Rueter 314/935-6429 Fx:314/935-4343
> Sr. Systems Spc. in EIT allen@seas.wustl.edu
> Camp Box 1207 Lopata Rm 406 ____ ___ ___
> Washington University | __|_ _|_ _|
> One Brookings Dr. | *_| |*| |*|
> St. Louis MO 63130 |____|___||_|
> Office: 406E Lopata
> Security tip: check your browser plugins with:
> http://mozilla.org/plugincheck

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• Re: [Seg3D] seg3d, I'd like to submit a build problem, Elizabeth Jurrus, 07/20/2015
  • Re: [Seg3D] seg3d, I'd like to submit a build problem, Ayla Khan, 07/20/2015
    • Message not available
      • Re: [Seg3D] seg3d, I'd like to submit a build problem, Ayla Khan, 07/21/2015

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