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Re: [Seg3D] problems importing MRI slices


Chronological Thread 
  • From: Jess Tate <jess@sci.utah.edu>
  • To: "S.M. Reza Rafieipour Alavi" <Seyed.RafieipourAlavi@unb.ca>
  • Cc: "seg3d@sci.utah.edu" <seg3d@sci.utah.edu>
  • Subject: Re: [Seg3D] problems importing MRI slices
  • Date: Fri, 31 Jul 2015 13:16:45 -0600
You can try exporting the dicom from another software (like osirix), which
may improve the formatting of the files.

cheers,
Jess


On Jul 31, 2015, at 1:14 PM, "S.M. Reza Rafieipour Alavi"
<Seyed.RafieipourAlavi@unb.ca> wrote:

> I just tried another file and it worked, I still do not know what the
> problem was. But thank you guys anyways! :)
>
> Cheers,
> Reza
>
> ________________________________________
> From: Jess Tate <jess@sci.utah.edu>
> Sent: Friday, July 31, 2015 4:13 PM
> To: seg3d@sci.utah.edu
> Cc: S.M. Reza Rafieipour Alavi
> Subject: Re: [Seg3D] problems importing MRI slices
>
> If your slices are different sizes, Seg3D will not be able to open them
> together. You could potentially load them in separately and combine them.
>
> cheers,
> Jess
>
>
>
>
> On Jul 31, 2015, at 1:10 PM, Gordon Duffley <gduff92@gmail.com> wrote:
>
>> If you want to load it as a volume, then you want to use “Import Layer
>> From Image Series”. My guess is that you actually have DICOMs from
>> multiple image sequences in that folder, but I can’t be sure. If that’s
>> not the case, and you can load the DICOMs into another software program,
>> you could just export it as a supported image volume and load that into
>> Seg3D.
>>
>> Gordon
>>> On Jul 31, 2015, at 1:06 PM, S.M. Reza Rafieipour Alavi
>>> <Seyed.RafieipourAlavi@unb.ca> wrote:
>>>
>>> Also when I used "Import Layer From Single File" it says Image in the
>>> serie have different sizes. However, I can open the same file with other
>>> softwares
>>>
>>> ________________________________________
>>> From: S.M. Reza Rafieipour Alavi
>>> Sent: Friday, July 31, 2015 4:03 PM
>>> To: Gordon Duffley
>>> Subject: Re: [Seg3D] problems importing MRI slices
>>>
>>> I have used both "Import Layer From Image Series" and "Import Layer From
>>> Single File". No I have not tried an older version yet.
>>>
>>> Reza
>>>
>>> ________________________________________
>>> From: Gordon Duffley <gduff92@gmail.com>
>>> Sent: Friday, July 31, 2015 3:55 PM
>>> To: S.M. Reza Rafieipour Alavi
>>> Cc: seg3d@sci.utah.edu
>>> Subject: Re: [Seg3D] problems importing MRI slices
>>>
>>> I assume you are using the “Import Layer From Image Series” option under
>>> the menu tab. Have you tried loading the stack in an older version of
>>> Seg3D?
>>>
>>> Gordon
>>>> On Jul 31, 2015, at 12:48 PM, S.M. Reza Rafieipour Alavi
>>>> <Seyed.RafieipourAlavi@unb.ca> wrote:
>>>>
>>>> Hello Gordon,
>>>>
>>>> It is Seg3D 2.2.1, and yes the files are DICOMs. As I hit the Import
>>>> button on Layer Importer Widget window, after a short while, it gives an
>>>> error massage of "Layer Importer Failed to Distract the...". So, I do
>>>> not know how to open up my DICOM files.
>>>>
>>>> Thanks,
>>>> Reza
>>>>
>>>>
>>>> ________________________________________
>>>> From: Gordon Duffley <gduff92@gmail.com>
>>>> Sent: Friday, July 31, 2015 3:38 PM
>>>> To: seg3d@sci.utah.edu
>>>> Cc: S.M. Reza Rafieipour Alavi
>>>> Subject: Re: [Seg3D] problems importing MRI slices
>>>>
>>>> Hi Reza,
>>>>
>>>> You are going to need to include a lot more detail if you want any help.
>>>> Are the files DICOMs? What version of Seg3D are you using?
>>>>
>>>> Cheers,
>>>> Gordon
>>>> On Fri, 2015-07-31 at 12:34 -0600, Elizabeth Jurrus wrote:
>>>>> Hi Reza,
>>>>>
>>>>> Forwarding your question onto our mailing list.
>>>>>
>>>>> --------
>>>>>
>>>>> Message: Hi, I have difficulty imorting MRI slices into the software.
>>>>> I need to know why it fails when I try to open the files in Seg3D.
>>>>> Thanks,
>>>>> Reza
>>>>>
>>>>>
>>>>>
>>>>
>>
>


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