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Re: [Seg3D] Questions regarding import of DICOM data


Chronological Thread 
  • From: Jess <jess@sci.utah.edu>
  • To: "Lobo, Fluvio" <flobo@ist.ucf.edu>
  • Cc: "seg3d@sci.utah.edu" <seg3d@sci.utah.edu>
  • Subject: Re: [Seg3D] Questions regarding import of DICOM data
  • Date: Fri, 11 Aug 2017 16:16:10 -0600
Hi Fluvio,

Seg3D is not meant to handle data that is not an image volume.  If the slices have different sizes, multiple slices per position, or high irregular spacing, Seg3D currently won’t be able to read it.  The dicoms can be split up into multiple volumes and loaded separately. Slices should load in order, however, so that is probably  a bug we can try to address.  

You can use horos, osirix, RadiAnt or something similar to reformat the dicoms as a work around or to split up the volumes.

cheers,
Jess

  


On Aug 11, 2017, at 8:40 AM, Lobo, Fluvio <flobo@ist.ucf.edu> wrote:

Hello,

We are trying to import some DICOM data to Seg3D but the data does not import in order.
Moreover, we keep getting an error due to difference in image sizes.

Does anyone in the community have a visualization tool or a pre-processing method to go around these issues?

Thank you!


Fluvio L. Lobo Fenoglietto, B.Bm.E., M.S.
Development Engineer for the Prototyping, Development and 3D Printing Lab (PD3D) at the Institute for Simulation Training – University of Central Florida

 

3100 Technology Pkwy
Partnership III, Office 201K
Orlando, FL 32826
Office: (407) 882 0680

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