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Re: [shapeworks-users] ShapeWorksPrep Error


Chronological Thread 
  • From: Shireen Elhabian <shireen@sci.utah.edu>
  • To: Harsha Irugal Bandara <harsha.irugal@gmail.com>
  • Cc: shapeworks-users@sci.utah.edu, Alan Morris <amorris@sci.utah.edu>, Shireen Elhabian <shireen@sci.utah.edu>
  • Subject: Re: [shapeworks-users] ShapeWorksPrep Error
  • Date: Sun, 17 Nov 2019 12:25:38 -0700
Hi Harsha,

The shell scripts will be deprecated very soon and as of now, they might not
be compatible any more with the latest release. I would try out the python
scripts in Examples/Python. You could start with the ellipsoid example and
adapt it to your dataset.

thanks and best regards
Shireen


------------------------------------------
Shireen Elhabian, M.Sc., Ph.D.
Research Assistant Professor
School of Computing
Scientific Computing and Imaging Institute
University of Utah
WEB 2815
72 Central Campus Drive, Salt Lake City, UT, 84112
Phone (801) 587-3206
Fax (801) 585-6513
Home Page: http://www.sci.utah.edu/~shireen

> On Nov 14, 2019, at 2:38 PM, Harsha Irugal Bandara
> <harsha.irugal@gmail.com> wrote:
>
> Hi Shireen,
>
> I'm attempting to pre-process a few femur samples by running them through
> the FullPipelineRunMeshtoDT.sh script and having some trouble with it (I'm
> using a windows 10 machine, and have installed the latest shapeworks
> release) . Attached is an image of the bash window error messages I've
> been getting
>
> Main issue seems to be that the script is looking for a "setup.txt" file
> that doesn't exist.
>
> Would you be able to point me in the right direction to troubleshoot this
> issue?
>
> Thanks and kind regards,
>
> Harsha Bandaralage, M. Sc.
> Biomechanical Engineer
> Division of Orthopedics
> Rady Children's Hospital - San Diego
>
> <shapeWorks_1.JPG>


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