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Re: [SCIRUN-USERS] Sweeping a range of conductivity values


Chronological Thread 
  • From: Brett Burton <zaracay@gmail.com>
  • To: Ayla Khan <ayla@sci.utah.edu>
  • Cc: Purbasha Garai <pg0222@gmail.com>, "scirun-users@sci.utah.edu List" <scirun-users@sci.utah.edu>, Jess Tate <jess@sci.utah.edu>
  • Subject: Re: [SCIRUN-USERS] Sweeping a range of conductivity values
  • Date: Fri, 16 Jan 2015 09:46:07 -0700
Be aware with the lead field network, the network will run marginally slower with each run, so you'll need to set your delay time within the getcolumn… module with that in mind.

Can I ask which physiological system you're modeling?  I did a similar study in the heart with changes in the anisotropic conductivity ratios using a static bidomain representation.  It was found that the uncertainty was negligible.

Brett

On Jan 15, 2015, at 11:20 PM, Ayla Khan <ayla@sci.utah.edu> wrote:

Hi Purbasha,

Have you had a look at the make_lead_field.srn and activation-based-fem_lead_field.srn networks in the Forward/Inverse toolkit? Would the method used to build the lead field matrix help you here?

Ayla

On Jan 13, 2015, at 1:26 PM, Purbasha Garai wrote:

Hello, 

I want to test multiple conductivity values in SCIRUN. 

I have set up a matrix with all the conductivity sets that I want to run  Then I have used the  GetRowOrColumnFromMatrix module to can choose one row at a time.  
Every single time I am trying to run the simulation, SCIRun stops working. 
Since I am not very much familiar with Bash scripting, I am using this network.
Can you please check if my network is correct? I am unsure how can I save leadfield after each iteration(i.e, after going though a set of conductivity) 
 
Regards
Purbasha
<123456789.srn><EPIthelium_change.mat>



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