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Thanks. I should have tried the program before I asked the question. Hopefully this is a better one:

Does anyone have advice on how to find good parameters for the Threshold Segmentation Level Set Filter?

I realize the appropriate values for these parameters are probably quite data-specific, but is there some protocol that describes how best to find them?

Thanks again, Dylan


On Feb 17, 2009, at 6:11 PM, Michael Callahan wrote:

File->Export Segmentation will write out a nrrd file with one or more
segmentations in it.

 Michael

On Tue, 2009-02-17 at 17:46 -0800, Dylan Morris wrote:

Hi List,

I was wondering if someone could tell me how I might export my
segmentations? I saw this listed as a crucial future feature; any idea
when to expect it? In the meantime, is anyone aware of a workaround?
Can I export the segmentation as a volume mask and then create the
isosurface in another program?

Thanks,
Dylan

Dylan Morris
Graduate Student
Biochemistry and Molecular Biophysics
California Institute of Technology
MC 114-96, 1200 E California Blvd
Pasadena, CA 91125

e: dmorris@caltech.edu
o: 626.395.3056

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• [Seg3D] wiki doc: dependency on GTK+ and nVidia drivers, Ramón Casero, 02/09/2009
  • [Seg3D] Re: wiki doc: dependency on GTK+ and nVidia drivers, Ramón Casero, 02/11/2009
    • [Seg3D] Re: Re: wiki doc: dependency on GTK+ and nVidia drivers, Michael Callahan, 02/11/2009
      • [Seg3D] export segmentations?, Dylan Morris, 02/17/2009
        • [Seg3D] Re: export segmentations?, Michael Callahan, 02/17/2009
          • [Seg3D] Re: Re: export segmentations?, Dylan Morris, 02/19/2009
            • [Seg3D] Re: Re: Re: export segmentations?, Michael Callahan, 02/19/2009
        • [Seg3D] RE: export segmentations?, Spencer Clegg, 02/17/2009

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