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[Seg3D] Re: Re: export segmentations?

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  • From: Dylan Morris <>
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  • Subject: [Seg3D] Re: Re: export segmentations?
  • Date: Thu, 19 Feb 2009 03:11:52 -0800

Thanks. I should have tried the program before I asked the question. Hopefully this is a better one:

Does anyone have advice on how to find good parameters for the Threshold Segmentation Level Set Filter?

I realize the appropriate values for these parameters are probably quite data-specific, but is there some protocol that describes how best to find them?

Thanks again, Dylan

On Feb 17, 2009, at 6:11 PM, Michael Callahan wrote:

File->Export Segmentation will write out a nrrd file with one or more
segmentations in it.


On Tue, 2009-02-17 at 17:46 -0800, Dylan Morris wrote:
Hi List,

I was wondering if someone could tell me how I might export my
segmentations? I saw this listed as a crucial future feature; any idea
when to expect it? In the meantime, is anyone aware of a workaround?
Can I export the segmentation as a volume mask and then create the
isosurface in another program?


Dylan Morris
Graduate Student
Biochemistry and Molecular Biophysics
California Institute of Technology
MC 114-96, 1200 E California Blvd
Pasadena, CA 91125

o: 626.395.3056

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