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[Seg3D] Re: Re: [bug] Truncation of Spacing and axis mins values in NRRD export


Chronological Thread 
  • From: Ramón Casero Cañas <rcasero@gmail.com>
  • To: seg3d@sci.utah.edu
  • Subject: [Seg3D] Re: Re: [bug] Truncation of Spacing and axis mins values in NRRD export
  • Date: Sat, 28 Jan 2012 12:21:03 +0000
On 27/01/12 00:53, Ayla Khan wrote:

We don't have export support for the MetaImage format, but it looks like it 
should be available through ITK - I can look into it.

Can you send me some test data or point me to a Seg3D project for testing?


Hi Alya,

As far as I know, MetaImage/MetaIO is ITK's own format, so exporting will be easy (Seg3D2 actually can read the format already) ;)

http://www.itk.org/Wiki/MetaIO/Documentation

I have attached a tiny test volume in Seg3D .mat format, and the same in MetaImage .mha format. This volume is a cropping of a microscopy image I'm working with, with small voxel size, and 1 order of magnitude better resolution in XY than in Z.

Cheers,

Ramon.

--
Dr. Ramón Casero Cañas

Computational Biology
Department of Computer Science
University of Oxford
Wolfson Building, Parks Rd
Oxford OX1 3QD

tlf     +44 (0) 1865 610737
web     http://www.cs.ox.ac.uk/people/Ramon.CaseroCanas
photos  http://www.flickr.com/photos/rcasero/

Attachment: foo.mat
Description: Binary data

Attachment: foo.mha
Description: Binary data


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